Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5079g00075 ATGGGAGTTCAAAGAAAAACGGCTTCTCAGCTTCAGGCCCTTCATAATTTTTATAAAAAGGAGAAGTATCCAACACCGAGAGCAATGGAAGACTTTGCTGGTGCTTTGGGGTTGACATATAAGCAAGTTCAAGATTGGTTTGTTGAGCAAAGGAGGAGAGATAAGAAGGAAAATGGAGTGTTAGGACCGTCATGTTCTACTTCGGGATATGATGCAGTTATAAATAGGAATGGTAGGAAGCAGAAAAAGCAGAAAAGTCATCAGGAGTTGCTTACAGCAAACTACATTCTAAAAAATGTGTTCCGGAAGGGTGGTCCTTTTCCTGATAAGGAATTTGATTCTCTTCCTCCAGGTCTCAACAATTCCTTTTCTGCTGGTCAAGAGGACCAAGGACCAATTAAAAGGAGGAAGGTTTCTGAGAGTGCAGTTGGAAGTCATCCTGAATCAAATAATAAAGCACCATTGAGAAAACATGGTATTGGAAAAGGTTTAATGACAGTGTGGAGGGCTACAAATCCAGATGCTGGAGATCTTCCTATTGGCTTTGGTCTTGGTGATAAGCCAAGGAAAGCAGTAACAAATGCTGGAAGACAAAAAAGTAAACTACAGAATGCGAGAAGTAAAATCCAAGACAAGAGGAGGGCTTTCATGCAAAGAAGAGTGGTGAAATATAACCAGGATGTGAATCATAATCAACCACAGAAGGAAAAATGCGAACTTGTTTTGGGCAGATTTATATCTGAGGAAGAACTTGATCGAGTGTCATTTCTAGTTGATGATGAAGAGCTAGAGATGAGAGAGTTGCAAGCAGGGCCAGCTACACACATGTGTTGTGCTCATCTTGCTTCCAGTGGAATTCTTGGCTGCTCTCTTTGTAAAGATGTGCTGTGTAAGTTTCCCCCACATACTGTTAAGATGAAGAAACCAATCTGTTTGCAACCCTGGGACTCCTCTCCAGAAACTGTCAAGAAACTTTTCAAGGTGTTCCATTTTCTTTATACATATGCTGCTGTTGTTAACATTTGCCCCTTCACTCTTGATGAGTTTGCTCAAGCGTTTCATGATAAGGACTCAATGCTACTTGGAAAGATTCATGTGGCCCTTCTTACAGTTCTTCTATCTGACATTGAAGCGGAACTTACTAGTGGATTTCCGCCTCATTTAAATAAGTCATGCAATTTTCTTGCATTGCTTCACTCGCAGGTTGAAAATCAAGAATACTCTCTGGACTTTTGGAAAAGATCTCTTAATCCCCTAACATGGATAGAAATACTCCGACAAGTTTTGGTTGCTGCAGGATTTGGTTCAAAACAAGGTTCTTTGAGAAGAGAGGCACTTAACAAGGAATTGAATCTGCTAGTAAAGTTTGGCTTATGTGCTGGCACTTTGAAGGGCGAGTTATTTAAAATTTTGTTAGCACAAGGCAATAATGGGTCAAAAGTGTCTGAACTGGCAAAGTCAATGCAGATTGTTGAATTGAACCTTGCCAGCACGACAGAGGAGCTGGAATCTTTAATATATTCAACCTTGTCAAGTGACATTACTTTATTTGAAAAGATTTCATCATGTGCATATCGACTACGCATGAGCTCTTTTAAGAAGGACATTGATGACGTCCAGTCAGATACAGAAGACTCTGGAAGTGTAGATGAACTTAATGACGGTCACACATGGAGCAGTGATGATTTTGAATATGATTCCTGGAACTCCAACTTAAGGATATTGAAGCGGGCAAGCAATTCTATAATGAAAAATAATACACTTATAGCAGCCACTGAAATTGATGAGAGCCATCCGGGTGAAGTGTGGCTATTAGGGTTGATGGAGAGTGAATATTCAGATTTGACCATTGAAGAAAAGTTGAATGCGTTAGTGGCTCTAACTGATCTTCTTTCTTCTGGGTCCAGCGTTAGGATGAAGGATTCGACAAAAGTTACTGCTGATTACAGTTCAAGCATCCAGTTACGTGGCTCTGGAGCAAAAATAAAGAGGTCAATAGTAAAGAAGCCTGGGTCATATTGGAATCAGATCAGACCAATGCATTGTGTCAAGGAAGGGCATTCATCATTGAATCCTCACTCCTATCCAGTGGATTCCTCATTATTATTCTCAAATATCTACAGTGACGCAGAATCCTCTGAGAAGGCAAAAGAAGCAACCGAAATAGGTTTAACCAATTCACACCCCATTCAATCAGTGTTTCTGGGTTCTGACCGTAGGTACAATAGATACTGGCTTTTCTTAGGGCCTTGCAACGTGGGTGACCCTGGCCATAGGAGAGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAAGTGATTGATGATGAAGAGGCTTTATGTGCCCTGTTGTCAGTTTTGGATGATAGAGGTAAACGGGAGGCACTTCTTGTTGAATCTTTGGAGAAGCTGAAAGACCCTCTTTGCAGGGCTATGTCCAGGATGATGGTCAACCACACTGGAATGTGCCATACGTCAAATTCTGATCAATCTGATCTTGATAGGATCACAGAAGACAGTTACTCTCCGATATCTGATGTAGATAACGTGAGCCTGATTGAGACGGCCAGTGACTCTCTACCTTCAGCCGGGGCTGTGGTGATAGAAGGTGGGAAGAAGGGAGTAGAACAAATGCAAAAGTGGATCCGTCTTCAAGCATATGATTCATGGATTTGGAATTCCTTTTATTTAAATCTCAATGTTGTGAAATATGGTAGAAGGTCTTATATTGATTCTCTGGCCAGATGTGAGAGTTGTCATGATCTGTTCTGGAGGGATGAGAGACACTGTAAAATTTGCCATTTGACATTTGAGCTTGATTTTGATCTTGAAGAAAGATATGCAATCCACACAGCCACATGCAGGGAGAAAGAAAGCAGTAATGCTTTTCCAAATCACAAAATCTTATCATCGAAGATCCAATCACTGAAGGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGTAGATGCGCTGGTGGGTGCTTGGAGGAAGTCTGCTCATAAGCTATGGGTCAGGCGACTCAGACGCACTTCAACTTTAACTGAGCTATTTCAGGTTGTTGCTGATTTTGTTGGTGCTATCAATGAGGAGTGGTTGTTTCAATGCAGTTTTCCTGATGGTCTGGTTGATAAAATAATTGCTTCTTTTGCACTTATGCCCCATACTTCATCAGCTCTTGCTTTATGGTTAGTGAAGTTGGATGCAATAATTGCTCCCTACCTGGACAAAGTCCAGCCTCTGAAGAAGCAGGACATTACTAAGAGAAAAATCTCTGGTGGTGTTTGA 3288 0.4115 MGVQRKTASQLQALHNFYKKEKYPTPRAMEDFAGALGLTYKQVQDWFVEQRRRDKKENGVLGPSCSTSGYDAVINRNGRKQKKQKSHQELLTANYILKNVFRKGGPFPDKEFDSLPPGLNNSFSAGQEDQGPIKRRKVSESAVGSHPESNNKAPLRKHGIGKGLMTVWRATNPDAGDLPIGFGLGDKPRKAVTNAGRQKSKLQNARSKIQDKRRAFMQRRVVKYNQDVNHNQPQKEKCELVLGRFISEEELDRVSFLVDDEELEMRELQAGPATHMCCAHLASSGILGCSLCKDVLCKFPPHTVKMKKPICLQPWDSSPETVKKLFKVFHFLYTYAAVVNICPFTLDEFAQAFHDKDSMLLGKIHVALLTVLLSDIEAELTSGFPPHLNKSCNFLALLHSQVENQEYSLDFWKRSLNPLTWIEILRQVLVAAGFGSKQGSLRREALNKELNLLVKFGLCAGTLKGELFKILLAQGNNGSKVSELAKSMQIVELNLASTTEELESLIYSTLSSDITLFEKISSCAYRLRMSSFKKDIDDVQSDTEDSGSVDELNDGHTWSSDDFEYDSWNSNLRILKRASNSIMKNNTLIAATEIDESHPGEVWLLGLMESEYSDLTIEEKLNALVALTDLLSSGSSVRMKDSTKVTADYSSSIQLRGSGAKIKRSIVKKPGSYWNQIRPMHCVKEGHSSLNPHSYPVDSSLLFSNIYSDAESSEKAKEATEIGLTNSHPIQSVFLGSDRRYNRYWLFLGPCNVGDPGHRRVYFESSEDGHWEVIDDEEALCALLSVLDDRGKREALLVESLEKLKDPLCRAMSRMMVNHTGMCHTSNSDQSDLDRITEDSYSPISDVDNVSLIETASDSLPSAGAVVIEGGKKGVEQMQKWIRLQAYDSWIWNSFYLNLNVVKYGRRSYIDSLARCESCHDLFWRDERHCKICHLTFELDFDLEERYAIHTATCREKESSNAFPNHKILSSKIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWVRRLRRTSTLTELFQVVADFVGAINEEWLFQCSFPDGLVDKIIASFALMPHTSSALALWLVKLDAIIAPYLDKVQPLKKQDITKRKISGGV 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5079g00075 1095 SMART testlast3 319 378 IPR018501 -
Pral5079g00075 1095 PANTHER HOMEOBOX PROTEIN SIX 210 1074 - -
Pral5079g00075 1095 CDD homeodomain 4 58 IPR001356 GO:0003677
Pral5079g00075 1095 SUPERFAMILY Homeodomain-like 5 63 IPR009057 -
Pral5079g00075 1095 ProSiteProfiles 'Homeobox' domain profile. 7 57 IPR001356 GO:0003677
Pral5079g00075 1095 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 731 804 IPR028941 -
Pral5079g00075 1095 ProSiteProfiles DDT domain profile. 319 378 IPR018501 -
Pral5079g00075 1095 Gene3D - 2 61 - -
Pral5079g00075 1095 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 599 638 IPR028942 -
Pral5079g00075 1095 MobiDBLite consensus disorder prediction 107 158 - -
Pral5079g00075 1095 Pfam Homeodomain 6 56 IPR001356 GO:0003677
Pral5079g00075 1095 SMART HOX_1 1 61 IPR001356 GO:0003677
Pral5079g00075 1095 Pfam DDT domain 320 375 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5079g00075 Pral-Chr5079 891358 902859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5079g00075 216 1071 Homeobox Transcription Factor Family AT1G28420 25.908 7.25e-74 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral5079g00075 WSD 3.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5079g00075 - - gmx:100792062 1428.31