Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5079g00056 ATGGCGAGGAAGTGCTCGCATTGTGGGAAAACAGGACATAATTCTAGGACTTGCACATCTCCTAGAGGCACTTATGTAGGGCTTCGTCTCTTTGGTGTTCAGCTAGAAACTTCTTCTGCTTCTGCTCCTTCTTCTTGTGTTTTTTCCATGAAGAAAAGCTTGAGCGTGGATTCTTTACCAGCTTCTTCATCTTCATCTTCTCCATCTTCCTCATTCTCTAATAATTCATCATCCAGAATCACCATTGATGAAAACTCTGAGAGATCCTCTATTGAGTATCTGTCAGATGGCCTAATAGATGCTGCAGCACAAGACAGAAGAAAAGGAATAGGTTGGACAGAAGATGAACACAGAAGATTTCTGGTTGGGCTCGAGAAGCTTGGGAAAGGAGATTGGAGAGGAATCTCCAGAAATTATGTCACAACAAGAACACCTACTCAAGTAGCTAGTCATGCTCAGAAATATTTTCTTCGACTCGCTGCTGTCAATAAGAAGAAGAGACGATCAAGCCTCTTTGACATGGCGGGTATAGAGGAGGATGTTAAATCTGCTATTGGAAGCTCGAAGAGTGAAGATAATGATCAGAAGGATCCTAGCTTGACATTGACGATGGGCCTAAGCTTGTTTGAAAAGAGAGATAAATCTGAAGTAACAGTGCCGACGTGGCAGCATAATAATTCCCTGCAGATGAAATCTTCTTCTTCATCATCATCACCCACATCATCTCCTGATGATCTGGAGCTCACACTTGCAGGACCCAGCAAGTCATCATCATCTTCTTCTTTTCTTCTAAGCTCTATTTGTGTCACATAA 813 0.4231 MARKCSHCGKTGHNSRTCTSPRGTYVGLRLFGVQLETSSASAPSSCVFSMKKSLSVDSLPASSSSSSPSSSFSNNSSSRITIDENSERSSIEYLSDGLIDAAAQDRRKGIGWTEDEHRRFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFLRLAAVNKKKRRSSLFDMAGIEEDVKSAIGSSKSEDNDQKDPSLTLTMGLSLFEKRDKSEVTVPTWQHNNSLQMKSSSSSSSPTSSPDDLELTLAGPSKSSSSSSFLLSSICVT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5079g00056 270 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Pral5079g00056 270 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Pral5079g00056 270 CDD SANT 112 156 IPR001005 -
Pral5079g00056 270 MobiDBLite consensus disorder prediction 220 270 - -
Pral5079g00056 270 FunFam transcription factor MYB1R1 110 161 - -
Pral5079g00056 270 MobiDBLite consensus disorder prediction 59 83 - -
Pral5079g00056 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 160 IPR017930 -
Pral5079g00056 270 Pfam Myb-like DNA-binding domain 112 156 IPR001005 -
Pral5079g00056 270 Gene3D - 110 162 - -
Pral5079g00056 270 ProSiteProfiles Myb-like domain profile. 112 156 IPR001005 -
Pral5079g00056 270 NCBIfam myb-like DNA-binding domain, SHAQKYF class 108 158 IPR006447 GO:0003677
Pral5079g00056 270 PANTHER TRANSCRIPTION FACTOR KUA1 3 239 - -
Pral5079g00056 270 SMART sant 108 158 IPR001005 -
Pral5079g00056 270 SUPERFAMILY Homeodomain-like 106 159 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5079g00056 Pral-Chr5079 717613 718995 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral5079g00056 Myb_DNA-binding 8.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5079g00056 - - pcin:129293374 284.648