Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5079g00053 ATGGAAGCGAGAGGTTTCTCGTCAGCCATTCCCAGGTTGAAGAGAGAAGAATGTAAACGAACAAAACACGATTCCAACTTCTCTGATTGGAAGATTCTCATTGGCCCTTCAGATTGGGAGGACTATTCCAGGGGGAAGGAAGGTTCAGCTAGGTATAGAATTCATAACCTCCCAGACAAATTGAACCCAGGAGTTTATGAGCTTGGTATTGCTGTGTCTCGCATTGGATTGGGGCGTAAGGTTTACAAGCTTGATCCAGACCGTATTGTTGTGGTTTACCTTGGAAAAGCTGACGATGTGAGAGCAAGACTCCAACAATATGGTCGAACTGGAGCTCATTTGAGCAATAACTGCTTAACTTTTGATCCAGATGATAGTAATCCTGCTTGTACCCATAAGGGGAAGGGATTTTTTGAGGAAATATTTTCACAAGGCTATCCAATTATTTATAGATGGGCTCCTATGCAAAACAAGGAAGATGCCAGGAAAACCGAAAGTCAGTTGCTCAATGTATTTGATTATGCATGGAACACCAGTAATAATGGTACCCGACGCCCAGATGATATTTTGAAGAAGATTAACAAAGTTGCTTCAGGTCATACAACATTTTCAAACATTGTCAAGGCGCTTCAACCTTCCACCCAGAAGCGAGTGGGTATCCAAATCAAATCAAGTAGCATGCCTTCCCCCGATAACAAATTACAAGAAATAGACAGAGGCAGCTATAATTTCTTATCTCGAGTATTTAAAATTGGCAGATCAAATCCAAGGTTAGTTCAAGATGTCCCGGCCGTCATTCAGGACACTACGACAAGATTTTGTGGAGTGGTCTTGGGTGATGGTTCTGTTTGTAGAAGACCACCAGTTGAAAGAAGAATGAGGTGTGTGGAACACGAAGGAATGAGAGTAAATGGGCCCACTTCGAAAGGGGGAATGAAATCAGAGAACAATCCGGACATAGAACTCAATGTGCCCTGTCATCAGAAGAGCGAAGGCTATGGTGAGGAACATGACCCTTTTGCCATTCAGGACAATACTGCAAGATTCTGTGGAGTGGTCTTGGGTGATGGTTCTGTTTGTACAAGATCACCAGCTGAAAGAAGAATGAGGTGCGTGGAACACAAAGGAATGAGAATAAATGGGTTCACTTCGAACAGGACAATGAAATCAGAGAACAATCTAGACTTAGAATTCAACGTGCCCTGCCATCTGAAGAGCCAAGGTCATGGTGAAGAGATTGTTAGCCAAGATTTGAAACTTGAGAATCCCCTTGATGGTAGAATTATTAATATATGTGGAATCATTTTAAATGATGGCACTCCTTGTAGGAGGCAACCTGTTAACGGGAGAAAAAGATGTCATGAGCATAAAGGGAAGAGAATCAATCATTTTAATTAG 1398 0.4213 MEARGFSSAIPRLKREECKRTKHDSNFSDWKILIGPSDWEDYSRGKEGSARYRIHNLPDKLNPGVYELGIAVSRIGLGRKVYKLDPDRIVVVYLGKADDVRARLQQYGRTGAHLSNNCLTFDPDDSNPACTHKGKGFFEEIFSQGYPIIYRWAPMQNKEDARKTESQLLNVFDYAWNTSNNGTRRPDDILKKINKVASGHTTFSNIVKALQPSTQKRVGIQIKSSSMPSPDNKLQEIDRGSYNFLSRVFKIGRSNPRLVQDVPAVIQDTTTRFCGVVLGDGSVCRRPPVERRMRCVEHEGMRVNGPTSKGGMKSENNPDIELNVPCHQKSEGYGEEHDPFAIQDNTARFCGVVLGDGSVCTRSPAERRMRCVEHKGMRINGFTSNRTMKSENNLDLEFNVPCHLKSQGHGEEIVSQDLKLENPLDGRIINICGIILNDGTPCRRQPVNGRKRCHEHKGKRINHFN 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5079g00053 465 Pfam GIY-YIG domain-containing protein 27 190 - -
Pral5079g00053 465 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 343 392 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5079g00053 Pral-Chr5079 693798 697733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5079g00053 350 464 HRT Transcription Factor Family AT5G56780 37.391 2.63e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Pral5079g00053 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5079g00053 - - pcin:129292928 607.446