Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5079g00028 ATGGCCATTACTGTATTTTCTAAGGAGTATGCTTCCTCAACATTTTGCCTAAACGAACTAGTCCAAATCCATCAATGTATCAAGAAAAACGGTCGACTGGTTTGGCCAATCTTTTATGATGTGGAGCCTTCTGAAGTACGACATCAAAGAGGAAAATATGGACAAGCACTAGTTACACATCGACAAAACTCAAGGGCTGATGAAGAAAAAATGAAAAGTTGGAAGCATGCACTACATGAAATAGCTGATCTTAAAGGTTCATCATGTGATCCAAGGAAAGATTATGAACATGTACTCATTGAAGATACTGTGGACCACATCTTTAGGATAATTCGAAGGGCCCCTCTTGATGTTGCCGAATATCCAGTTGGTTTAAATTCTCGCTTGCAAAAAATAAACTCTCTATTGCAACTGGGGTCAAATGATGAGGTTATCATGATGGGAATTTATGGAACTGGGGGAATGGGTAAAACAACAATAACACGTGCAGTGTATAATACAATTGCTGATAATTTTGATTATTTGTGCTTTCTTGATGATATCATAGAAGGATCTGGAAAACATGGCCTAGAACAAGAGCAAGCCAGGATGCTTTCAAAACTCTTAGGAGAGAAGATAGAAATTGAAGAGATTAGTCAAGGAGTTAAGCTCATAAAACGAATGCTCAAAGATAAGAAAGTTCTTTTGATTCTTGATAATGTAGATGAACGAATGCAGTTACGAAAGTTAGCTGGGGCATGTGAATGGTTTGGTTGGGGGAGCAGGATCATTATAACAACACGAGATTTTCATTTACTCAAGAGTCATGGGGTTGAAAGAAGATATGAAATGGAGGGATTAAATCATGAAGAGTCTCTTGAATTGTTAAGTTGGAATGCCTTTGGGAAGATGCAAGTTGATGATCCAAGGTACACAGAAGTTGTGAATGAGGTGATAAGTTATTCCAGTGGTCTTCCCTTGGCCCTTGAAATATTAAGCTGTGATTTGTATGGTAAGAATGTAAATGAGTGGAAATCTATGTTGGATGGATGTAAAAGAATCCCTCATGGTAAGATTCAACAAATATTAGAAGTAAGCTATAAAGGCTTACAACAACTTGAAAAAGAAGTTTTTCTTGATATTGCTTGCTTCTACAAAGGTAGTGAATTGGAATATGTCAAAAAGATAGTAGCAATTGCTCATGATTTTGACCCAGATTATCATATTGGAGTGTTGGTAGACAAATGCCTTATAAAGATTTATGGGGGCTGTTTTATTCAAATGCACGATCTAGTACAAGATATGGGGAGAGACATCATTCGTCTACAATCACCAAAAGATCCAGGAAAACGCAGTAGGCTATGGTCAAATAAAGATATCTTGCGTGTTTTGGAGAGAAATGAGGGCACAGATGAAGTTATTATCATAATTCAAGTTGAAAGGTCTAAATGCATAGAAGTAGAATGGAATGGAAAAGCCTTCAAGAGTATGAACAATCTCAAAATTCTTATTCTTGAGAATACAAAATTTTCACAAGGTCCCAAATATCTCCCCAATAGTTTAGCAGTATTGAGATGGAGAGGATATCCTTCATCAAGTTTGCCACGTGGTTTTCGTCCAAAGGATCTTGTTGAATTCAATGTGAGAGATAGTTGTTTCAATTCAACGGAAATCAGTAAGATAACGCAGAATATGAAAATGAGTGTTTTGAACCTTGAAGGGTGCGAGTATATCATTCACATACCTGATTTATCAGGCCTCTCAAGTTTAAAGGAGTTACGGCTTGGTAATTGCAAAAATTTGATTGAAATTGATAATTCGGTTGGGCAATTAGCAAAACTTGAAACTTTGAATGTACGTAACTGTGCCCAGCTTACGACTTTTCCAAGTGAATTGAATACACCCTCTCTTTATGATCTGAATCTGAAGATGTGCTCAAGTTTGAATTACTTTCCAGAAATAGCAACTCGTGAAATGAAAATAAAAGAGTTGAAATTGGTTGGAACTGGTATAAATCAATTGCCTCTATCAGTTGAAAATCTTACTCAACTTGTAAAGATAACACATATTGGAGATGACACTGTGGGCAAGGGAATTAGGTCAATGAAGCTACCAAGTAGCACTTTTTTGTTGCCAGAACTTGAGAAGATAGATGTTGAAGGATGCGAAGAGTTGCTTATGGAAGTGGAGTCAATGATATGTCCAAACATAGGGAATCTTCAACTACAAAGATGTAATATATCCAATGAGAGCCTTCATATTTATCTTACTTCATTCCCCAATCTTTGGTTTTTGGACTTGAGCGGCAGTGATTTCACAATTTTGCCCGCATGCATAGAACATTGTCAAAATTTGGAAATAATTAAGCTACGTGAATGCAAGCATCTAATAGAAGTGGAAAAGGTTCCGCCTGGCATACGATATTTGACGGCAGAAGATTGTGTATCAATGAGTTCAGAGTCCAAAAATTTATTATTGAGAATTACTTGTATCTGTAATGCCCATCAACATTCAATTTGGTTTTTATGGCTACAACTTAGACAATTTTTTGTGTGCCAGGGGGAAGCATCCCAGAATGGTTCGATCACTGTAACAAAGGACGGTCCATTTCTTTTTGGTTTCGTGACCCCCACCCCCCATCTCTCTGTGTTTGTGCTATTGCTCAACAAATGGAGGATCATGAATCGATCCAAACAAAAGTGTTCATAA 2688 0.3705 MAITVFSKEYASSTFCLNELVQIHQCIKKNGRLVWPIFYDVEPSEVRHQRGKYGQALVTHRQNSRADEEKMKSWKHALHEIADLKGSSCDPRKDYEHVLIEDTVDHIFRIIRRAPLDVAEYPVGLNSRLQKINSLLQLGSNDEVIMMGIYGTGGMGKTTITRAVYNTIADNFDYLCFLDDIIEGSGKHGLEQEQARMLSKLLGEKIEIEEISQGVKLIKRMLKDKKVLLILDNVDERMQLRKLAGACEWFGWGSRIIITTRDFHLLKSHGVERRYEMEGLNHEESLELLSWNAFGKMQVDDPRYTEVVNEVISYSSGLPLALEILSCDLYGKNVNEWKSMLDGCKRIPHGKIQQILEVSYKGLQQLEKEVFLDIACFYKGSELEYVKKIVAIAHDFDPDYHIGVLVDKCLIKIYGGCFIQMHDLVQDMGRDIIRLQSPKDPGKRSRLWSNKDILRVLERNEGTDEVIIIIQVERSKCIEVEWNGKAFKSMNNLKILILENTKFSQGPKYLPNSLAVLRWRGYPSSSLPRGFRPKDLVEFNVRDSCFNSTEISKITQNMKMSVLNLEGCEYIIHIPDLSGLSSLKELRLGNCKNLIEIDNSVGQLAKLETLNVRNCAQLTTFPSELNTPSLYDLNLKMCSSLNYFPEIATREMKIKELKLVGTGINQLPLSVENLTQLVKITHIGDDTVGKGIRSMKLPSSTFLLPELEKIDVEGCEELLMEVESMICPNIGNLQLQRCNISNESLHIYLTSFPNLWFLDLSGSDFTILPACIEHCQNLEIIKLRECKHLIEVEKVPPGIRYLTAEDCVSMSSESKNLLLRITCICNAHQHSIWFLWLQLRQFFVCQGEASQNGSITVTKDGPFLFGFVTPTPHLSVFVLLLNKWRIMNRSKQKCS 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5079g00028 895 ProSiteProfiles TIR domain profile. 1 111 IPR000157 GO:0007165
Pral5079g00028 895 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 374 IPR027417 -
Pral5079g00028 895 Gene3D - 114 272 IPR027417 -
Pral5079g00028 895 Pfam TIR domain 2 107 IPR000157 GO:0007165
Pral5079g00028 895 SUPERFAMILY "Winged helix" DNA-binding domain 351 458 IPR036390 -
Pral5079g00028 895 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 86 IPR035897 -
Pral5079g00028 895 Gene3D Ribonuclease Inhibitor 646 814 IPR032675 -
Pral5079g00028 895 PRINTS Disease resistance protein signature 315 329 - -
Pral5079g00028 895 PRINTS Disease resistance protein signature 578 594 - -
Pral5079g00028 895 PRINTS Disease resistance protein signature 221 235 - -
Pral5079g00028 895 PRINTS Disease resistance protein signature 146 161 - -
Pral5079g00028 895 Pfam NB-ARC domain 131 361 IPR002182 GO:0043531
Pral5079g00028 895 Gene3D Ribonuclease Inhibitor 478 645 IPR032675 -
Pral5079g00028 895 SUPERFAMILY L domain-like 477 822 - -
Pral5079g00028 895 Gene3D - 1 113 IPR035897 -
Pral5079g00028 895 Gene3D - 279 364 IPR042197 -
Pral5079g00028 895 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 793 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5079g00028 Pral-Chr5079 394551 398893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5079g00028 12 759 WRKY Transcription Factor Family AT4G12020 29.831 3.89e-73 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5079g00028 - - pcin:129312441 826.239