Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5079g00025 ATGACACGCCGACCAAAAATATCTTCGATACACTATGAATGGACTTACGATGTCTTCCTCAATTTTAGAGGTGAAGATACTCGTCATAGTTTCATAGGAACTCTAAATAAAGAGCTCAATCGAAAGGGAGTTCACACCTTCTTTGATGACAAAGAAATAGGAATAGGGGATGAAATTACACCAACGCTTCTCAAAGCAATCCGGGAATCTAGGATGGCCATTACTGTATTTTCCAAGGAGTATGCTTCCTCAACATTTTGCCTAAACGAACTAGTCCAAATCCATCAATGTATCAAGAAAAACGGTCGACTGGTTTGGCCAATCTTTTATGATGTGGAGCCTTCTGAAGTACGACATCAAAGAGGAAAATATGGACAAGCACTAGCTACACATCGACAAAACTCAAGGGCTGATGAAGAAAAAATGAAAAGTTGGAAGCATGCACTACATGAAATAGCTGATCTTAAAGGTTCATCATGTGATCCAAGGAAAGATTACGAACATGTACTCATTGAAGATACTGTGGATCACCTCTTTAGGATAATTAGAAGGGCCCCCCTTGATGTTGCGGAATATCCAGTTGGTTTAAATTCTCGCTTGCAAAAAATAAACTCTCTATTGCAACTGGGGTCAAATGATGAGGTTATCATGATGGGAATTTATGGAACTGGGGGAATGGGTAAAACAACAATAACACGTGCAGTGTATAATACAATTGCTGATAATTTTGATTATTTGTGCTTTCTTGATGATATCAAAGGAGGATCTGGAAAACATGGCCTAGAACAAGAGCAAGCCAGGATGCTTTCAAAACTCTTAGGAGAGAAGATAGAAATTGAAGAGATTAGTCAAGGAGTTAAGCTCATAAAGCGAATGCTCAAAGATAAGAAAGTTCTTTTGATTCTTGATAATGTAGATGAACGAATGCAGTTACGAAAGTTAGCTGGGGCATGTGAATGGTTTGGTTGGGGGAGCAGGATCATTATAACAACACGAGATTTACATTTACTCAAGAGTCATGGGGTTGAAAGAATATATGAAATGGAGGGATTAAATCATGAAGAGTCTCTTGAATTGTTAAGTTGGAATGCCTTTGGGAAGATGCAAGTTGATGCTCCAAGGTACACAGAAGTTGTGAATGAGGTGATAAGTTATTCCAGTGGTCTTCCCTTGGCCCTTGAAATATTAAGCCGTGATTTGTATGGTAAGAATGTAAATGAGTGGAAATCTATGTTGGATGGATGTAAAAGAATCCCTCATGGTAAGATTCAACAAATATTAGAAGTAAGCTATGAAGGCTTACAACAACTTGAAAAAGAAGTTTTTCTTGATATTGCTTGCTTCGACAAAGGTAGTGAATTGGAATATGTCAAAAAGATGGTAGCAATTGCTCATGATTTTGACCCAGATTATCATATTGGAGTGTTGGTAGACAAATGTCTCATAAAGATTTATGGGGGCTGTCTTATTCAAATGCACGATCTGGTACAAGATATGGGGAGAGACATCGTTCGTCTACAATCACCAAAAGATCCAGGAAAACGCAGTAGGCTATGGTCAAATAAAGATATCTTGCGTGTTTTGGAGAGAAATGAGAAAGATAATACTTAG 1611 0.3799 MTRRPKISSIHYEWTYDVFLNFRGEDTRHSFIGTLNKELNRKGVHTFFDDKEIGIGDEITPTLLKAIRESRMAITVFSKEYASSTFCLNELVQIHQCIKKNGRLVWPIFYDVEPSEVRHQRGKYGQALATHRQNSRADEEKMKSWKHALHEIADLKGSSCDPRKDYEHVLIEDTVDHLFRIIRRAPLDVAEYPVGLNSRLQKINSLLQLGSNDEVIMMGIYGTGGMGKTTITRAVYNTIADNFDYLCFLDDIKGGSGKHGLEQEQARMLSKLLGEKIEIEEISQGVKLIKRMLKDKKVLLILDNVDERMQLRKLAGACEWFGWGSRIIITTRDLHLLKSHGVERIYEMEGLNHEESLELLSWNAFGKMQVDAPRYTEVVNEVISYSSGLPLALEILSRDLYGKNVNEWKSMLDGCKRIPHGKIQQILEVSYEGLQQLEKEVFLDIACFDKGSELEYVKKMVAIAHDFDPDYHIGVLVDKCLIKIYGGCLIQMHDLVQDMGRDIVRLQSPKDPGKRSRLWSNKDILRVLERNEKDNT 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5079g00025 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Pral5079g00025 536 Pfam NB-ARC domain 202 432 IPR002182 GO:0043531
Pral5079g00025 536 SMART till_3 15 155 IPR000157 GO:0007165
Pral5079g00025 536 PRINTS Disease resistance protein signature 217 232 - -
Pral5079g00025 536 PRINTS Disease resistance protein signature 386 400 - -
Pral5079g00025 536 PRINTS Disease resistance protein signature 292 306 - -
Pral5079g00025 536 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 157 IPR035897 -
Pral5079g00025 536 SUPERFAMILY "Winged helix" DNA-binding domain 422 529 IPR036390 -
Pral5079g00025 536 Gene3D - 12 184 IPR035897 -
Pral5079g00025 536 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Pral5079g00025 536 Pfam TIR domain 16 178 IPR000157 GO:0007165
Pral5079g00025 536 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 183 - -
Pral5079g00025 536 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 528 IPR044974 GO:0006952
Pral5079g00025 536 Gene3D - 350 435 IPR042197 -
Pral5079g00025 536 Gene3D - 185 344 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5079g00025 Pral-Chr5079 314156 317423 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5079g00025 194 534 WRKY Transcription Factor Family AT5G45050 33.043 3.16e-45 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5079g00025 - - pcin:129312441 610.142