Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5071g00002 ATGGATGAAGCTCAGGTTGGCTCTGGTTCCTTACCTCCTTTCCTGGCGAAGACATATGAGATGGTGGAGGATCCTTCCTCGGATTCGGTAGTTTCTTGGACCAGCACTAATAAAAGTTTTGTAGTATGGGATCCGACCGAATTTGCAAGGGTTTTGCTACCAAGATTCTTTAAACATAATAACTTCTCGAGTTTCATCAGGCAGCTGAATACTTATGGTTTTAGAAAAGTCGACCCAGAACGGTGGGAATTTGCGAATGATGATTTTATAAGGGGAAAACCACATCTTTTGAAGAGTATCCATAGGCGAAAACCAGTTCATAGTCATTCTTTGCAGAATCAGCAGGGACATGGGCCTTCTCCATTGTCTGAATCAGAAAGGCAGAATTTCAGTGATGAAATAAGGAGGCTTAAACAAGATAAAGAAGTACTTGCCTTAGATTTACAGAGATATGAACAGGAATGGAAAACTTGTGAGATACAAATACATTGTTCAAGCAACCGTTTGGAAAAGTTGGAACAGAAGCAACAAAAGATGGTTTCCTCAATTTCTCAAGCCTTGCAGAAACCTGGGGTTGCTTTAAATCTCTGGTCACTTTCAGAATCCCCGGATAGAAAACGAAGGATGCCGAGAGGTGGATCCTTTTCTGATGAAGCTAGCATTGAAGATCCTATGGAGACTTCTCAAATGTTACCTAGAGAAATCTCCATACTGACATCAGACATGGAGCGATTGAATCAGCTGGAATCATCTCTGTTATTCTGGGAGAACATTGCACTTGACTTTGGTGATACCTTTATTCAGGGTTCTTCAAACTTGGACTTTGATGAGTCTACAAGTTGTCCTGATAGTCCATCTATATCGTGCGTGCAACTAGATATTGAAATTCAGCCAAAGTCATCTGGAATAGACATGAATGCTGAGCCTGCTGCATCTGCTGTTCCTGAGACTGTTCCATCAAAAGAACAAGTAGTGGAAACAACCACCGTGGCGACTGGTGTTAATGATGTCTTCTGGGAACAGTTCTTGACAGAGAATCCCGGTTCGTCAGAGACACAAGAGGTGCCGATGGAAATGAAGGATTCTGGTGCCAGAAAGAATGAAGGAAAACCTATTGAAGTAAATAGATTTTGGTGGAATGTGCCGACTGTAAATAATCTTCCGGAACAGATTGGGCATCTTAGTCAAGCAGAGAAAACTTAA 1203 0.4173 MDEAQVGSGSLPPFLAKTYEMVEDPSSDSVVSWTSTNKSFVVWDPTEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPERWEFANDDFIRGKPHLLKSIHRRKPVHSHSLQNQQGHGPSPLSESERQNFSDEIRRLKQDKEVLALDLQRYEQEWKTCEIQIHCSSNRLEKLEQKQQKMVSSISQALQKPGVALNLWSLSESPDRKRRMPRGGSFSDEASIEDPMETSQMLPREISILTSDMERLNQLESSLLFWENIALDFGDTFIQGSSNLDFDESTSCPDSPSISCVQLDIEIQPKSSGIDMNAEPAASAVPETVPSKEQVVETTTVATGVNDVFWEQFLTENPGSSETQEVPMEMKDSGARKNEGKPIEVNRFWWNVPTVNNLPEQIGHLSQAEKT 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5071g00002 400 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5071g00002 400 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 234 IPR027725 -
Pral5071g00002 400 MobiDBLite consensus disorder prediction 347 368 - -
Pral5071g00002 400 FunFam Heat shock transcription factor 1 7 104 - -
Pral5071g00002 400 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5071g00002 400 Gene3D - 8 104 IPR036388 -
Pral5071g00002 400 MobiDBLite consensus disorder prediction 102 129 - -
Pral5071g00002 400 MobiDBLite consensus disorder prediction 109 127 - -
Pral5071g00002 400 Coils Coil 127 154 - -
Pral5071g00002 400 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5071g00002 400 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5071g00002 400 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5071g00002 400 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5071g00002 400 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Pral5071g00002 400 Coils Coil 169 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5071g00002 Pral-Chr5071 26750 31275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5071g00002 1 400 HSF AT4G18880 48.786 2.46e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral5071g00002 HSF_DNA-bind 7.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5071g00002 K09419 - gmx:100798004 585.104