Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5062g00006 ATGTGTGAGACAAAGATGGGTGAGGCGGGGGAAGCAGAAGAGCGGCCTGTTTTCAGAGATATTAGACGCTATTACTGTGAATACTGTGGCATCTGCAGGTCCAAGAAGACCTTGATAACCGCTCACATCAATACCCACCATAAGGAGGAGGTGGAGAAAGCCAGAATTAATACAGATTTCAAAGTGGAGGATGTAAAATCCAATACTTGCAAGGAATGTGGTGCTAGTTTTAAAAAGCCTGCCTATCTAATCCAGCACATGCAAAGCCATTCACTTGAGAGGCCATATGTGTGTGCCATTGGGGATTGTCAGGCAAGTTACAGAAGAAAGGACCACTTGACTCGTCATTCTCTTCAGCATCAAGGGAAAACTTTCAAGTGTCCTGTTGAGAATTGCAATCGCGACTTTGCTTTTCAAGGAAATATGACAAGACATGTCAAGGAATTCCATAATGAGAATTCCGCTTCTACTACTGCTGAAAATTCGAAGCAGTATGTTTGCCCGGAAGTTGGTTGTGGAAAGGTTTTCAAATTTGCATCAAAGCTGAAAAAGCATGAAGATTCCCATGTTAAGCTGGAGTCAGTAGAGGTAATCTGCTTATATCCTGATTGTATGAAGCATTTCACAAATGAGCAGTGCCTTCAAGAACATATCAAATTGTGCCACCAATACGTGACCTGTGAGACATGTGGAAAAAACCAGTTGAAGAAGAATATTAAGCGGCACCTCCGTATGCATGAAAGCAGCACTTCGTCAGGGACGTTTAAATGTGAATATAAAGATTGTGGTAGTCAATTCTCAAGTAAATCTAATCTCCAGAAGCATGAGAAGGCTGTGCACTTTGAAGAGAAACCTTTTGTGTGTGGCCTTCCTGGTTGTGGCATGAGATTCTCTTACAAACATGTGAGAGATAAACACGAGAAAATTGGATCGCATGTCTATAGCCTGGGAGATTTTGAAGAAACTGATGGGCAGTTCAGATCAAGACCCAGAGGAGGGCGAAAGAGAACATGTCCTACTGTTGAAATGTTAGTTAGAAAAAGAGTTACTCCACCCAGTCAATTGCATCATTGGTTACTTACGCAAGAGGATGATCAGATGCATTAA 1107 0.4201 MCETKMGEAGEAEERPVFRDIRRYYCEYCGICRSKKTLITAHINTHHKEEVEKARINTDFKVEDVKSNTCKECGASFKKPAYLIQHMQSHSLERPYVCAIGDCQASYRRKDHLTRHSLQHQGKTFKCPVENCNRDFAFQGNMTRHVKEFHNENSASTTAENSKQYVCPEVGCGKVFKFASKLKKHEDSHVKLESVEVICLYPDCMKHFTNEQCLQEHIKLCHQYVTCETCGKNQLKKNIKRHLRMHESSTSSGTFKCEYKDCGSQFSSKSNLQKHEKAVHFEEKPFVCGLPGCGMRFSYKHVRDKHEKIGSHVYSLGDFEETDGQFRSRPRGGRKRTCPTVEMLVRKRVTPPSQLHHWLLTQEDDQMH 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5062g00006 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Pral5062g00006 368 ProSitePatterns Zinc finger C2H2 type domain signature. 257 280 IPR013087 -
Pral5062g00006 368 SUPERFAMILY beta-beta-alpha zinc fingers 162 190 IPR036236 -
Pral5062g00006 368 ProSitePatterns Zinc finger C2H2 type domain signature. 98 120 IPR013087 -
Pral5062g00006 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 125 IPR013087 -
Pral5062g00006 368 ProSitePatterns Zinc finger C2H2 type domain signature. 199 222 IPR013087 -
Pral5062g00006 368 ProSitePatterns Zinc finger C2H2 type domain signature. 167 189 IPR013087 -
Pral5062g00006 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 194 IPR013087 -
Pral5062g00006 368 Pfam Zinc finger, C2H2 type 125 150 IPR013087 -
Pral5062g00006 368 Pfam Zinc finger, C2H2 type 69 90 IPR013087 -
Pral5062g00006 368 Pfam Zinc finger, C2H2 type 165 189 IPR013087 -
Pral5062g00006 368 Pfam Zinc finger, C2H2 type 96 120 IPR013087 -
Pral5062g00006 368 Pfam Zinc finger, C2H2 type 255 280 IPR013087 -
Pral5062g00006 368 SUPERFAMILY beta-beta-alpha zinc fingers 237 293 IPR036236 -
Pral5062g00006 368 Gene3D Classic Zinc Finger 123 151 - -
Pral5062g00006 368 Gene3D Classic Zinc Finger 283 309 - -
Pral5062g00006 368 Gene3D Classic Zinc Finger 152 223 - -
Pral5062g00006 368 SUPERFAMILY beta-beta-alpha zinc fingers 67 120 IPR036236 -
Pral5062g00006 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Pral5062g00006 368 PANTHER ZINC FINGER PROTEIN 9 354 - -
Pral5062g00006 368 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Pral5062g00006 368 SUPERFAMILY beta-beta-alpha zinc fingers 123 151 IPR036236 -
Pral5062g00006 368 ProSitePatterns Zinc finger C2H2 type domain signature. 288 312 IPR013087 -
Pral5062g00006 368 Gene3D Classic Zinc Finger 224 282 - -
Pral5062g00006 368 ProSitePatterns Zinc finger C2H2 type domain signature. 127 150 IPR013087 -
Pral5062g00006 368 Gene3D Classic Zinc Finger 96 122 - -
Pral5062g00006 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 155 IPR013087 -
Pral5062g00006 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 285 IPR013087 -
Pral5062g00006 368 SMART c2h2final6 96 120 IPR013087 -
Pral5062g00006 368 SMART c2h2final6 24 46 IPR013087 -
Pral5062g00006 368 SMART c2h2final6 255 280 IPR013087 -
Pral5062g00006 368 SMART c2h2final6 197 222 IPR013087 -
Pral5062g00006 368 SMART c2h2final6 286 312 IPR013087 -
Pral5062g00006 368 SMART c2h2final6 68 90 IPR013087 -
Pral5062g00006 368 SMART c2h2final6 225 246 IPR013087 -
Pral5062g00006 368 SMART c2h2final6 165 189 IPR013087 -
Pral5062g00006 368 SMART c2h2final6 125 150 IPR013087 -
Pral5062g00006 368 Gene3D Classic Zinc Finger 8 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5062g00006 Pral-Chr5062 37250 40380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5062g00006 72 315 C2H2 Transcription Factor Family AT1G72050 44.257 5.48e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5062g00006 zf-C2H2 0.0091 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5062g00006 K09191 - qsa:O6P43_001489 572.778