Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5062g00002 ATGCGGGAGGCATCATATATCAACCTGATGGATCAGTATCAGGCAGGGAGACCTCCTGAGAAGCTCCATCAGGGTGCCTCAATCACGCTCAGTTTAAGGCCATATGTGTGTGCCATTGAGGACTGTCAAGCAAGTTACAGAAGGAAGGACCACTTGACTCGTCACTCTCTTCAGCATCAAGGGAAAACTTTCAAGTGTCCAGTTGAGAATTGCAATCGCGACTTTGCTTTTCAAGGAAATATGACAAGACATGTCAAGGAATTTCATAATGAGAATTCCACTTCTACTACTGCTGAAAATTCAAAGCAGTATATTTGCCAGGAAGTTGGTTGTGGAAAGGTTTTCAAATTTGCATCAAAGCTGAAAAAGCATGAAGATTCTCATGTTAAGCTGGAGTCAGTAGAGGTAATCTGCTTATATCCTGATTGTATGAAGCATTTCACAAATGAGCAGTGCCTTCAAGAACATATCAAATTGTGCCACCAATACGTGACCTGTGAGACATGTGGAAAAAAACAGTTGAAGAAGAATATTAAGCGGCACCTCCGTATGCATGAAAGCAGCACTTCGTCAGAGACGTTTAAATGTGAATATAAAGATTGTGGTAGTCAATTCTCAAGTAAATCTAATCTCCAGAAGCATGTGAAGGCTGTGCACTTTGAAGAGAAACCTTTTGTGTGTGGCTTTCCTGGTTGTGGCATGAGATTCTCTTACAAACATGTGAGAGATAAACACGAGAAAATTGGATCGCATGTCTATAGCCTGGGAGATTTTGAAGAAACTGATGAGCAGTTCAGATCAAGACCGAGAGGAGGGCGAAAGAGAACATGTCCTACTGTTGAAATGTTGGTTAGAAAAAGAGTTACTCCACCCAGTCAATTGGATCATTGGTTACTTAACGCAAGAGGATGA 912 0.4145 MREASYINLMDQYQAGRPPEKLHQGASITLSLRPYVCAIEDCQASYRRKDHLTRHSLQHQGKTFKCPVENCNRDFAFQGNMTRHVKEFHNENSTSTTAENSKQYICQEVGCGKVFKFASKLKKHEDSHVKLESVEVICLYPDCMKHFTNEQCLQEHIKLCHQYVTCETCGKKQLKKNIKRHLRMHESSTSSETFKCEYKDCGSQFSSKSNLQKHVKAVHFEEKPFVCGFPGCGMRFSYKHVRDKHEKIGSHVYSLGDFEETDEQFRSRPRGGRKRTCPTVEMLVRKRVTPPSQLDHWLLNARG 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5062g00002 303 ProSitePatterns Zinc finger C2H2 type domain signature. 227 251 IPR013087 -
Pral5062g00002 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 64 IPR013087 -
Pral5062g00002 303 Pfam C2H2-type zinc finger 194 219 - -
Pral5062g00002 303 ProSitePatterns Zinc finger C2H2 type domain signature. 138 161 IPR013087 -
Pral5062g00002 303 PANTHER ZINC FINGER PROTEIN 21 294 - -
Pral5062g00002 303 SUPERFAMILY beta-beta-alpha zinc fingers 27 61 IPR036236 -
Pral5062g00002 303 Pfam Zinc finger, C2H2 type 35 59 IPR013087 -
Pral5062g00002 303 Pfam Zinc finger, C2H2 type 64 89 IPR013087 -
Pral5062g00002 303 Pfam Zinc finger, C2H2 type 104 128 IPR013087 -
Pral5062g00002 303 ProSitePatterns Zinc finger C2H2 type domain signature. 196 219 IPR013087 -
Pral5062g00002 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 224 IPR013087 -
Pral5062g00002 303 SUPERFAMILY beta-beta-alpha zinc fingers 176 229 IPR036236 -
Pral5062g00002 303 SUPERFAMILY beta-beta-alpha zinc fingers 62 90 IPR036236 -
Pral5062g00002 303 Gene3D Classic Zinc Finger 62 90 - -
Pral5062g00002 303 ProSitePatterns Zinc finger C2H2 type domain signature. 66 89 IPR013087 -
Pral5062g00002 303 SUPERFAMILY beta-beta-alpha zinc fingers 101 128 IPR036236 -
Pral5062g00002 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 133 IPR013087 -
Pral5062g00002 303 SMART c2h2final6 64 89 IPR013087 -
Pral5062g00002 303 SMART c2h2final6 225 251 IPR013087 -
Pral5062g00002 303 SMART c2h2final6 164 185 IPR013087 -
Pral5062g00002 303 SMART c2h2final6 136 161 IPR013087 -
Pral5062g00002 303 SMART c2h2final6 194 219 IPR013087 -
Pral5062g00002 303 SMART c2h2final6 35 59 IPR013087 -
Pral5062g00002 303 SMART c2h2final6 104 128 IPR013087 -
Pral5062g00002 303 Gene3D Classic Zinc Finger 163 221 - -
Pral5062g00002 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 94 IPR013087 -
Pral5062g00002 303 Gene3D Classic Zinc Finger 91 162 - -
Pral5062g00002 303 Gene3D Classic Zinc Finger 222 248 - -
Pral5062g00002 303 ProSitePatterns Zinc finger C2H2 type domain signature. 37 59 IPR013087 -
Pral5062g00002 303 Gene3D Classic Zinc Finger 31 61 - -
Pral5062g00002 303 ProSitePatterns Zinc finger C2H2 type domain signature. 106 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5062g00002 Pral-Chr5062 13334 15527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5062g00002 33 254 C2H2 Transcription Factor Family AT1G72050 50.730 2.53e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5062g00002 zf-C2H2 0.0071 CL0361