Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5058g00007 ATGGACGATTCCTTCTCGGACGACAAGCTTTGTGGCTTCCTATTTGCGGTTCTCGCAGTCACTCCTTCGCAACCCGACCCGTGTGCCAGTTTGTCCTTCAAACAGCACTGCGACATATTTGGCGACGGTTCTAATGCCGTCGGATTTAGGTCCGAGAACGGGGTCGTTTTAGTTCCGGTGGATTCGGCGGCGGAGCAGGATGATGGCGGGAACGCGTCTCCGTCTGATTCAGCGCAGTGCGAAGTGTTCGCGAAAGAAGGGCAATGCAAGAAGGAAAATTGGGAGGTGTCTGGGAGTAATAGCTTGAGGAGGAAGAGGATGACGAAGATTGGGATGGTGAATGGGAGTGTTAGTGTGATTCACCAGCTTCACGCTTTGGTTAGCAAGAGGTGTTTAAAGATTGATGCTCGAGTGGTTTTGGTTGACCTTGGGGACTGTGGAGAGGCTAGAGCAGTGGTACTGGTCGATGTGTATCTTCCGATTGCATTGTGGAGTGGCTGGCAGTTTCCGAGATCCGGGTCCACTGCTGGCGCTCTTTTTCGGCATTTGAGATGTGACTGGGATGAGAGAAGATCGATTCTTTCTTGCTCCGACTATATTAGGAAGATTCAGGGGGCTAATGAGAGCATTTGGAGCCTCTGTGACTGTCATGTATTTGGGTGCAAACTCCACTACCATGCGAAAGATTCTTCAAAGAATAGTCTATTTGAGCTCCATGAAATTTTTAAGAGTATACCTGGTGTAGGAAAAGAGCGGAAGCTAGATAATTCCAGGATAGTACCCTTGAATGACTCTTGGAGATCTGGAATTTGGGAGTTGTCTGATGACATTTTAACAAAAATTCTAGCTCCCCTTGGCCCGATGGACATTGCCAGGGTTTCTGCAACTTGTCGTCATTTGAGATCCTTGGCTGCTTCAATAATGCCTTATACAAAGTTAAAACTCTTTCCTCACCAGCAGACAGCTGTTGAGTGGATGTTGCATCGGGAGCGAAATGCTGAATGCTTGGAACATCCTTTGTATGTTTCTTTTTCAACAGAGGATGGATTTGTTTTCCATATAAATACTGTATCTGGTGAAATAGTCATTGGGGAAGCTCCCACCATTAAAGATTTTTGTGGTGGAATGTTCTGTGATGAGCCTGGTTTGGGTAAGACTGTAACAGCTCTTTCTCTTATACTGAAGACACAAGGTACGTTGGCAGAACCACCTGCTGGAGCAAATGTGGTTTGGTGTCACCATAATGGTAATCTTAAATGTGGTTATTATGATATTGTTGGTAGTTACATAATTGACAATACTAATTTGGGGAAGAGGGACATATGCCAGGATGCTAGGAATAATGAGCATCATGATTACTCCTCCAAAAGAGCTAGATTGAAGGCTCCTGCTGAGAAAACCATTGGACTTAATGATAAATGTTCTGGGGAAGGAAAAAAATCACCTGCAGGCGAATTCTCTGAGCAGCCAATAGCTGCAAGTCGATGCTCTTTGGGCTTGAGTTGCATAAAGAAAAATCTATGTGCCACTTTTGAAGAGGAAGTTGGGCATTCCAAAGAAAGAAAAGATAGTGTAAACCCTTTGAAACTGGAACATGCTTCAAATGCTGAAACACATGTATCTGAAAATAAGCCAGTTGGCACTTCGTATGGACATGATAAGGGTTGCAAGGGACCTGACAAGCCTGTAACAGATTCTTTTGAGTACAGGGACACATGGATTCAGTGTGATGCTTGCCAGAAGTGGCGAAAGCTTGCAGATGCCAATATGGCTAATACTAATGCAGCGTGGTTCTGTAGTATGAACACTGATCCTTTGTATCAGAGTTGTAGCATCCCAGAACAACCCTGGCATAATGCCTGTGAAATAACTTATTTACCAGGATTTCATGTAAAAGGTAGTGCGGGGGGTGAGAAGAAGAATGTTTCATTTTTCACTAGTGTACTTAAGGAGCATTACACAATAATAAATTCCGAAACTAAGAAAGCCCTCACTTGGTTGGCTAGACTTCCTCCTGACAAGCTTTCTGAAATGGAAATAAATGGCATAAGGGGTCCTGTTTTAAGCACCTGTACTGTGTCCAGCCGATATCTTAATCCATACCACAAGATATTTCAAGCATTTGGTCTCATCAAGAGATTAGAAAAAGGTGTAAACAAGTGGTACTACCCACGAAATCTAAATAATAATTTGGCTTTTGATGTAACTGCACTTGGCATGGCCCTGCGTGAGCCATTAGATTCATTTAGGCTATACTTGTCAAGAGCAACCCTTATAGTTGTTCCTGCTAACTTGGTTGATCACTGGAAAACTCAAATAGAAAAGCATGTCCAACATAGCCAACTGCGAGTTTATGTTTGGAATGATACTTGGAAGTGGAAGCCATCTGTGCACAGCCTGGCATGGGATTATGATGTTGTCATTACTACATTTAGTCGCCTGAGTGCAGAGTGGAGCCCACGTAAGAGAAGTGTTCTGATGCAAATCCATTGGCTGAGAATCATATTAGATGAAGGGCACACCCTTGGCTCAAGCCTGAACTTGACAAACAAGTTGCAAATGGCTATTTCATTGACAGCTTCAAATCGTTGGATACTGACAGGAACACCAACACCTAACACTCCTAAAAGTCAACTTTCGCATTTACAACCGTTGCTAAGGTTCCTTCATGAAGAAGCTTATGGGCTGAATCCAAAGTCGTGGGAAGTTGGCATCCTTAAGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTTTCGTCTGTTGCATCTACTTCGTAACTGCATGATTAGTGCAAGGAAGATAGACTTGCATAATATTCCCCCATGCATCAAGAAAGCTGTTTTTCTAGATTTTACTGAGGGTCATGCCAGAAGTTATAATGAATTGGTGTTAACAGTTCGCCGCAATATATTAATGGCAGATTGGAATGATCCTTCACACATTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTAGGATTGCAACAATAAAAAACGTCAGGCTCTCATGCTGTGTTGCCGGACATATTAAAGTTACACACGCTGGTGAAGATATTCAGGAAACAATGGATATGTTAGTAGGAAATGGTATGGATCCTGATTCAGCTGAGTATTCCTCTATAAGATATAATCTGCTTTGTGGTGGCCGGTGTGTCAGGTGCAAGGAGTGGTGTCGCCTTCCCTTTATTACACCATGTCGGCATCTGTTGTGCCTTGACTGTGTTGCTTTAGACAGTATGAAGTGTACTTATCCTGGATGCAATAAATTATATGAGATGCAGAATCCTGATACACTAGCCCGCCCTGAAAATCCTAACCCAAAGTGGCCTGTGCCTAAAGATCTTATTGAGCTACAACCTTCATATAAACAGGATAATTGGGATCCTGATTGGCAATCGACATCTAGTAGCAAGGTGTCCTATCTTGTCCAGAGATTGAAAGATTTACAGGAATCCAATAAGGAGAAGGGCTATTATAGTAGCAATGATCAGGTTCTTGCTGAGAGCAGTTGCCCTCTGCTGATGAGAGACGTAAAATCATCATTCCAGCAATGCTCTCCAGGCACTGGGCCCAATAATATGCCTGAGAAAGTTCTTATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATTAAATATACTGGGATGTATAGTCCAATGCCTTTAGGCAACAAGAAGAAGTCACTGGCCACATTCCAGCATGATCCCAGTTGTATGGCACTAGTGATGGATGGAAGTGCTGCACTGGGTCTTGACTTGAGTTTTGTTACACACGTGTTTTTAATGGAACCAATCTGGGATAGAAGCATGGAGGAACAAGTAATTAGTCGTGCTCATCGCATGGGTGCTTGTCGTCCCATTCACGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAGAAGTAGGAACTCCCCTAGTGAAGCTGTTGTACAATGTGATGATGGTAAAAAATTCCCAACTGGTGCTGTCCAATTTGAAGAAGGGGGACGAGGACGTTCTTTGCATGATTTTGCAGAAAATAGTTATCTACTGAGACTTAGATTTGTGAACACCAATACTAATGCCTTAGAAGGTCTCTGA 4140 0.4302 MDDSFSDDKLCGFLFAVLAVTPSQPDPCASLSFKQHCDIFGDGSNAVGFRSENGVVLVPVDSAAEQDDGGNASPSDSAQCEVFAKEGQCKKENWEVSGSNSLRRKRMTKIGMVNGSVSVIHQLHALVSKRCLKIDARVVLVDLGDCGEARAVVLVDVYLPIALWSGWQFPRSGSTAGALFRHLRCDWDERRSILSCSDYIRKIQGANESIWSLCDCHVFGCKLHYHAKDSSKNSLFELHEIFKSIPGVGKERKLDNSRIVPLNDSWRSGIWELSDDILTKILAPLGPMDIARVSATCRHLRSLAASIMPYTKLKLFPHQQTAVEWMLHRERNAECLEHPLYVSFSTEDGFVFHINTVSGEIVIGEAPTIKDFCGGMFCDEPGLGKTVTALSLILKTQGTLAEPPAGANVVWCHHNGNLKCGYYDIVGSYIIDNTNLGKRDICQDARNNEHHDYSSKRARLKAPAEKTIGLNDKCSGEGKKSPAGEFSEQPIAASRCSLGLSCIKKNLCATFEEEVGHSKERKDSVNPLKLEHASNAETHVSENKPVGTSYGHDKGCKGPDKPVTDSFEYRDTWIQCDACQKWRKLADANMANTNAAWFCSMNTDPLYQSCSIPEQPWHNACEITYLPGFHVKGSAGGEKKNVSFFTSVLKEHYTIINSETKKALTWLARLPPDKLSEMEINGIRGPVLSTCTVSSRYLNPYHKIFQAFGLIKRLEKGVNKWYYPRNLNNNLAFDVTALGMALREPLDSFRLYLSRATLIVVPANLVDHWKTQIEKHVQHSQLRVYVWNDTWKWKPSVHSLAWDYDVVITTFSRLSAEWSPRKRSVLMQIHWLRIILDEGHTLGSSLNLTNKLQMAISLTASNRWILTGTPTPNTPKSQLSHLQPLLRFLHEEAYGLNPKSWEVGILKPFEAEMEEGRFRLLHLLRNCMISARKIDLHNIPPCIKKAVFLDFTEGHARSYNELVLTVRRNILMADWNDPSHIESLLNPKQWKFRIATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVGNGMDPDSAEYSSIRYNLLCGGRCVRCKEWCRLPFITPCRHLLCLDCVALDSMKCTYPGCNKLYEMQNPDTLARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKDLQESNKEKGYYSSNDQVLAESSCPLLMRDVKSSFQQCSPGTGPNNMPEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMPLGNKKKSLATFQHDPSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGACRPIHVETLAMRGTIEEQMLEFLQDADRSRNSPSEAVVQCDDGKKFPTGAVQFEEGGRGRSLHDFAENSYLLRLRFVNTNTNALEGL 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5058g00007 1379 ProSiteProfiles F-box domain profile. 267 313 IPR001810 GO:0005515
Pral5058g00007 1379 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 71 1317 - -
Pral5058g00007 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 830 1317 IPR027417 -
Pral5058g00007 1379 CDD F-box_SF 272 304 - -
Pral5058g00007 1379 CDD RING-HC 1050 1075 - -
Pral5058g00007 1379 Gene3D - 1087 1337 IPR027417 -
Pral5058g00007 1379 Pfam SNF2-related domain 318 974 IPR000330 GO:0005524|GO:0140658
Pral5058g00007 1379 Pfam CW-type Zinc Finger 572 615 IPR011124 GO:0008270
Pral5058g00007 1379 Gene3D - 565 618 - -
Pral5058g00007 1379 Gene3D - 738 932 IPR038718 -
Pral5058g00007 1379 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1177 1326 IPR001650 -
Pral5058g00007 1379 Pfam F-box domain 272 311 IPR001810 GO:0005515
Pral5058g00007 1379 ProSitePatterns Zinc finger RING-type signature. 1066 1075 IPR017907 -
Pral5058g00007 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 396 IPR027417 -
Pral5058g00007 1379 CDD SF2_C_SNF 1196 1301 - -
Pral5058g00007 1379 ProSiteProfiles Zinc finger CW-type profile. 567 618 IPR011124 GO:0008270
Pral5058g00007 1379 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 721 888 IPR014001 -
Pral5058g00007 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 754 925 IPR027417 -
Pral5058g00007 1379 SUPERFAMILY F-box domain 268 306 IPR036047 GO:0005515
Pral5058g00007 1379 SMART fbox_2 273 313 IPR001810 GO:0005515
Pral5058g00007 1379 CDD DEXDc_SHPRH-like 743 929 - -
Pral5058g00007 1379 SMART helicmild6 1209 1291 IPR001650 -
Pral5058g00007 1379 SMART ultradead3 311 902 IPR014001 -
Pral5058g00007 1379 Pfam Helicase conserved C-terminal domain 1194 1291 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5058g00007 309 394 RAD5 or RAD16-like Gene Family AT5G22750 32.979 1.89e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5058g00007 SNF2_N 1.6e-96 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5058g00007 - - pcin:129315314 2516.49