Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5057g00018 ATGTCTTTACGGCATCATAATAATGTTGAGCTCAATGGTGTCTCAGCTGTAGGGTCAGGATGTTGCCTTTATGATCTTTTGTGCGCTGAAACTCCAAATTTGCAATCCCAAAAGAATCAGCGGCCACCTTCTTCTGGTCCTCTAGAAAGGTTGGAGAAGTTGATGCATGAAGCAGGGAACAAGTATTGTGCTGATTGTGGATCTCCTGAGCCAAAATGGGTATCTTCAAATATTGGAGCATTTATTTGCATAAAATGTTCTGGCATACATAGAAGCCTAGGAGTTCATATATCAAAGGTTCTATCATTGAAGCTAGATCAATGGACAGATGATGAAGTTTCTGAACTGGCAAAGTTAGGAGGAAATGCATCAGTAAATGAAAAGTACGAAGCTTGCATCCCTAGTTATATGAAAAAGCCAAAGCCAAGTTCCTCCATTGAGGAGCGTACTGACTTTATCAGGAGGAAATACGAGTTGCTACAATTTATGGGGTGTGAAGAACAGTTGTCCTGCCCCTTTATACCACAACAGAGCACTTCCTCATGCATAGACAAGAAAAATTATAATAAACAAGGAAACAAAAATCGTATTGGGAGTGCATTTCGTAACAGCTGGGGAAGAAAAGAACCTGATAATATTAAGGCTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTGGAATTTGTTGGGTTGATAAAGGTTAACGTGGTCAAAGGCACTAACCTGGCTGTCCGGGATGTAATGACTAGTGATCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAGACACGAGTTATAAAGAACAATTTGAATCCTGTCTGGAATGAGAGCCTAATGTTATCAATTCCGCACAACATTCCTCCACTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAACCCCTACTTGCAGCTGCAAAAGCCTATGAGAAATCTGCAGTCAACGAGTCCATGGAGTTTGAAAAATGGGTGGCAAGTTCAGATGGCGCTCTCGTTAAAGATGGTGCCATCTCCCTCGAAGATGGGAAGATCAGACAGGAAATATCTGTAAAGCTGATGAATGTGGAGAGAGGGGAGCTGGAAGTTGAGCTTGAATGTCTTCCTCTCACTCAATAG 1161 0.4152 MSLRHHNNVELNGVSAVGSGCCLYDLLCAETPNLQSQKNQRPPSSGPLERLEKLMHEAGNKYCADCGSPEPKWVSSNIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVSELAKLGGNASVNEKYEACIPSYMKKPKPSSSIEERTDFIRRKYELLQFMGCEEQLSCPFIPQQSTSSCIDKKNYNKQGNKNRIGSAFRNSWGRKEPDNIKASKKSNSLAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGEAEIDIQPLLAAAKAYEKSAVNESMEFEKWVASSDGALVKDGAISLEDGKIRQEISVKLMNVERGELEVELECLPLTQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5057g00018 386 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Pral5057g00018 386 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Pral5057g00018 386 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Pral5057g00018 386 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 228 386 - -
Pral5057g00018 386 FunFam stromal membrane-associated protein 1 isoform X1 33 168 - -
Pral5057g00018 386 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 227 321 IPR035892 -
Pral5057g00018 386 Gene3D C2 domain 229 386 IPR035892 -
Pral5057g00018 386 CDD C2_ArfGAP 229 373 - -
Pral5057g00018 386 SMART C2_3c 231 326 IPR000008 -
Pral5057g00018 386 SUPERFAMILY ArfGap/RecO-like zinc finger 50 163 IPR037278 -
Pral5057g00018 386 Pfam Putative GTPase activating protein for Arf 50 162 IPR001164 GO:0005096
Pral5057g00018 386 ProSiteProfiles C2 domain profile. 209 328 IPR000008 -
Pral5057g00018 386 SMART arf_gap_3 49 170 IPR001164 GO:0005096
Pral5057g00018 386 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Pral5057g00018 386 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 42 386 IPR044518 GO:0005096|GO:0005543
Pral5057g00018 386 Pfam C2 domain 231 319 IPR000008 -
Pral5057g00018 386 Gene3D Arf GTPase activating protein 30 170 IPR038508 -
Pral5057g00018 386 ProSiteProfiles ARF GTPase-activating proteins domain profile. 45 170 IPR001164 GO:0005096
Pral5057g00018 386 CDD ArfGap 51 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5057g00018 Pral-Chr5057 68837 75083 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5057g00018 43 386 C2H2 Transcription Factor Family AT4G21160 48.555 4.57e-119 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5057g00018 K12486 - gmx:100799376 569.696