Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5055g00001 ATGGATGGGAATGGAGTAGAGAGGGACCTGGAGATAGAGGGTGGTGGGGTGGCGATGATCATGGCGAATGATTATGGCAAACAAGACAGGGAAGACAATACTTCAGAACCTTCATCAGACGACGTCGTCATCAAAGAATCCTATCTCCGAGAGCCTTTGCTTCTCAAGAACAATAGGATGAACAACACGTCGCAGCTCGCCATTGTTGGAGCCAATGTTTGCCCTATTGAAAGTCTTGATTACGAGATCATTGAGAATGATCTATTTAAACAAGATTGGAGGTCTAGAACGAAGGTCGAAATATGCCAATATATTGTTCTTAAATGGACTCTTGCACTTCTAATTGGTTTGAGCACAGGGCTTGTTGGCTTTTTTAATAACCTTGCTGTCGAGAACATTGCTGGTTTCAAGCTTCTACTCACTAACAGTCTCATGCTCAAAGAAAAGTATTATCAGGCCTTTGTGGCATTGGCCGGTTGTAACATGATTTTGGCCATTGCCGCGGCCATCCTCTGTGCCTACATTGCCCCTGCAGCAGCTGGGTCTGGCATACCTGAGGTGAAGGCCTACCTCAACGGTATAGATGCCCATTCTATATTGGCTCCAAGTACCCTCTTTGTCAAGATCTTTGGTTCAATTTTTGGTGTTGCTGCGGGGTTTGTTGTTGGTAAGGAAGGACCTATGGTACATACTGGTGCTTGCATAGCCAATTTACTTGGACAAGGTGGTTCTCAAAAGTATCGGCTGACATGGAAATGGCTCAGATTCTTTAAAAATGATCGAGATCGAAGGGATTTGATCACATGTGGTGCGGCTGCTGGGGTTGCTGCTGCCTTCCGTGCTCCAGTTGGTGGTGTCCTTTTTGCACTCGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTGTGGCGGACTTTCTTCACAACAGCAGTAGTAGCAGTAGTACTGAGAAGTTTCATGGACTTGTGTCGGGGTGGAAACTGTGGTCTTTTTGGGGAAGGCGGGTTGATAATGTTTGATGTTAATGAAGCAAAGCCCGCATACAGCACCCCTGACCTCCTGGCAGTTGTATTTCTGGGTGTCATTGGAGGGATTTTGGGAAGCCTTTACAATTACCTTGTGGACAAGGTCCTTCGCACTTATAGCATCATGAACGAGAGAGGCCCTATATTTAAAATTGTGCTTGTTGTCACAATCTCCCTTTTGACCTCTTGTTGTTCATTTGGCCTTCCATGGCTATCAAACTGCATCCCTTGCCCTCCTAACTTGGGGGACCAGTGTCCCACCGTAGGTCGCTCTGGCCATTACAAGAATTTCCAATGTCCCCCTAATCATTACAATGATCTTGCTTCTCTCTTTTTCACTACTAATGATGATGCCATCCGCAACCTCTTTATAGCAGGCTCAGACAAGGAGTTTAATCTCTCTACACTTCTAATCTTCTTTGTTGCCATATACTTCCTTGGAATCATCACTTATGGAATTGCTGTTCCCTCTGGACTATTTATTCCTGTCATACTTGCCGGGGCCTCATATGGGCGGCTCGCTGGCTGTCTTTTAAGTCCATTCACTGTACTTGATGTTGGATTGTTCGCTCTCCTTGGAGCTGCATCCTTCCTAGGCGGTACCATGAGAATGACTGTTTCTATTTGTGTCATACTCCTTGAACTCACCAATGACCTCCTAATGCTACCACTGGTGATGCTGGTTCTTCTTGTTTCAAAGACTGTGGCTGATAGCTTCAACAAAGGTGTATATGATCAGATGGTGAAAATGAAGGGGCTGCCTTATATGGAAGCACATGCTGAACCATACATGAGGCATTTAGTTGCAAGTGATGTTGTCTCTGGCCCTCTGATCACTTTTTCTGGGGTTGAAAAAGTGGGAAATATCATCCATGCCTTAAGGATTACTAGGCACCATGGCTTTCCTGTAATCGATGAACCTCCTTGTTCGGCTGCTCCTGAGTTGTTTGGGTTGGTTTTACGGTCACATCTGCTTGTGCTTCTTAAAAGGAAGAAGTTCACAAAGCAGAAGATGATGACTGGGTCTACTATTATGAGAAACTTCAAAGCACGGGATTTTGCAAAGCCAGGGTTGGGCAAGGGCCCCAAGCTTGAGGATTTGGACATTTCAAAGGAGGAGATGGAAATGTATGTTGATCTCCATCCAATTACTAACACGTCACCGTATACAGTGGTGGAATCAATGTCTCTAGCAAAAGCTGCAGTTCTTTTCCGGGAGCTCGGCCTCAGACACTTGTTGGTGGTGCCGAAGACACCTGCAAGACCTCCAATAGTTGGGATCTTGACGAGGCATGACTTCATGCCTGAGCATATTTTGGGACTATACCCTCACTTGGACCCTCACAAGTAG 2376 0.4579 MDGNGVERDLEIEGGGVAMIMANDYGKQDREDNTSEPSSDDVVIKESYLREPLLLKNNRMNNTSQLAIVGANVCPIESLDYEIIENDLFKQDWRSRTKVEICQYIVLKWTLALLIGLSTGLVGFFNNLAVENIAGFKLLLTNSLMLKEKYYQAFVALAGCNMILAIAAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSQKYRLTWKWLRFFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFMDLCRGGNCGLFGEGGLIMFDVNEAKPAYSTPDLLAVVFLGVIGGILGSLYNYLVDKVLRTYSIMNERGPIFKIVLVVTISLLTSCCSFGLPWLSNCIPCPPNLGDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGSDKEFNLSTLLIFFVAIYFLGIITYGIAVPSGLFIPVILAGASYGRLAGCLLSPFTVLDVGLFALLGAASFLGGTMRMTVSICVILLELTNDLLMLPLVMLVLLVSKTVADSFNKGVYDQMVKMKGLPYMEAHAEPYMRHLVASDVVSGPLITFSGVEKVGNIIHALRITRHHGFPVIDEPPCSAAPELFGLVLRSHLLVLLKRKKFTKQKMMTGSTIMRNFKARDFAKPGLGKGPKLEDLDISKEEMEMYVDLHPITNTSPYTVVESMSLAKAAVLFRELGLRHLLVVPKTPARPPIVGILTRHDFMPEHILGLYPHLDPHK 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5055g00001 791 PRINTS Chloride channel signature 272 291 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5055g00001 791 PRINTS Chloride channel signature 547 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5055g00001 791 PRINTS Chloride channel signature 177 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5055g00001 791 PRINTS Chloride channel signature 497 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5055g00001 791 PRINTS Chloride channel signature 208 227 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5055g00001 791 PRINTS Chloride channel signature 529 545 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5055g00001 791 PRINTS Chloride channel signature 585 599 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5055g00001 791 Gene3D Clc chloride channel 100 598 - -
Pral5055g00001 791 Pfam Voltage gated chloride channel 165 579 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pral5055g00001 791 SUPERFAMILY CBS-domain pair 602 776 IPR046342 -
Pral5055g00001 791 SMART cbs_1 618 671 IPR000644 -
Pral5055g00001 791 SMART cbs_1 729 780 IPR000644 -
Pral5055g00001 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 55 781 - -
Pral5055g00001 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 611 778 - -
Pral5055g00001 791 SUPERFAMILY Clc chloride channel 86 600 IPR014743 -
Pral5055g00001 791 ProSiteProfiles CBS domain profile. 725 789 IPR000644 -
Pral5055g00001 791 CDD ClC_6_like 77 598 - -
Pral5055g00001 791 Gene3D - 599 782 IPR046342 -
Pral5055g00001 791 Pfam CBS domain 727 775 IPR000644 -
Pral5055g00001 791 PRINTS Plant CLC chloride channel signature 325 332 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5055g00001 791 PRINTS Plant CLC chloride channel signature 307 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5055g00001 791 PRINTS Plant CLC chloride channel signature 293 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5055g00001 791 PRINTS Plant CLC chloride channel signature 449 465 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5055g00001 791 PRINTS Plant CLC chloride channel signature 82 90 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pral5055g00001 791 FunFam Chloride channel ClC3 100 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5055g00001 Pral-Chr5055 420 5740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5055g00001 4 791 Ion Channels AT5G49890 77.060 0.0 1187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5055g00001 K05016 - cave:132178584 1225.69