Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5051g00002 ATGGCGGACTCAGCATCATCTATCACTAAAAAGAGTGGCCCCTCTTCGGATTCGAAAAGTAACAGGGATTATTCCACTGCAATCTTAGAACGTAAGAAGGCACCTAACCGTCTTGTTGTTGATGAGGCTATTAATGATGACAATTCTGTGGTAACTTTGCATCCTTCTACAATGGAAAAGCTTCAGTTTTTCCGAGGGGACACTGTTCTAATAAAGGGAAAGAAGCGAAGGGACACAGTTTGCATTGTTCTTACTGATGAGCAATGTGAAGAATCAAAAGTTAGGATGAATAAAGTTGTGCGGGCTAATCTTAGAGTACGACTTGGAGATGTGGTATCTGTCAATCAATGTGCTGATGTGAAATATGGGAAGCGGGTTCACATTCTTCCAATAGATGATACTATAGAGGGTGTTACTGGCAACTTGTTTGATGCATATCTCAAGCCATACTTTCTGGAGGCCTACCGACCTGTGAGAAAAGGCGATCTCTTTCTTATAAGGGGTGGGATGCGGAGTGTTGAATTCAAAGTAATAGAGACAGATCCTGGTGAATACTGTGTTGTGGCACCAGACACCGAAATCTTCTGTGAAGGAGAACCCATCAAACGTGAAGATGAAGAAAGATTAAATGAAGTTGGCTATGATGATGTAGGTGGAGTTAGGAAGCAAATGGCTCAAATCCGTGAGTTAGTAGAGCTTCCTCTTAGACACCCACAGCTCTTCAAATCCATCGGTGTTAAGCCTCCAAAAGGAATCTTGCTTTATGGACCACCTGGTTCTGGAAAGACTCTGATTGCTAAAGCAGTAGCTAATGAAACAGGAGCATTCTTCTTTTTGATTAATGGACCTGAGATAATGTCAAAGCTGGCCGGTGAAAGTGAAAGCAACTTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATTCCCCCTCTATAATTTTCATTGATGAATTAGATTCAATTGCTCCAAAGAGAGAAAAGACACATGGGGAAGTGGAAAGGAGAATTGTCTCACAACTTTTGACTCTAATGGATGGCCTCAAGACCCGGTCACATGTTATTGTTATAGGAGCCACCAATAGACCCAACAGCGTTGATCCTGCCTTGAGAAGATTTGGGAGATTTGATCGGGAGATTGACATTGGTGTGCCAGATGAAGTTGGAAGATTGGAGGTTCTTAGGATTCACACTAAAAATATGAAACTTGCAGATGACGTTGATCTTGAAAAAGTTGCTAGAGATACACATGGATATGTCGGTGCAGATCTTGCTGCTCTTTGCACAGAGGCTGCACTACAGTGTATTCGGGAGAAAATGGATGTCATTGACTTGGAGGATGAAACAATTGATGCTGAGGTGTTGAATTCCATGGCTGTGACAAATGATCACTTCCAAACTGCTTTAGGCGCTTCAAATCCGTCAGCTTTGCGTGAAACAGTTGTGGAGGTTCCCAATGTTTCCTGGGATGATATTGGGGGTTTAGAGAATGTTAAAAGGGAGCTTCAAGAGACTGTTCAATATCCAGTGGAGCACCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCAAAAGGTGTTCTCTTCTACGGACCTCCTGGCTGTGGTAAAACACTTCTTGCGAAAGCAATTGCTAATGAATGCCAGGCCAACTTTATAAGTGTAAAAGGACCTGAGCTGCTAACAATGTGGTTTGGTGAGAGTGAGGCAAATGTGCGTGAAATATTTGACAAAGCCCGACAATCAGCTCCATGTGTTCTTTTCTTTGATGAACTTGACTCTATTGCAACCCAGCGTGGCAGTTCCACAGGAGATGCTGGAGGTGCTGCAGATAGGGTTTTGAACCAACTATTAACAGAAATGGATGGAATGTCAGCTAAGAAAACAGTTTTCATTATTGGGGCAACAAATAGGCCTGACATTATAGACCCTGCTTTGCTCAGGCCCGGACGTCTGGACCAACTGATATATATCCCATTGCCAGATGAGGATTCACGCCTTCAAATCTTCAAAGCATGTTTGAGGAAGTCGCCAGTCTCAAAGGATGTTGACCTAACCGCCCTTGCCCGGTTTACTCATGGATTCAGCGGTGCAGACATCACAGAAATTTGTCAGAGAGCCTGCAAATATGCTATCAGAGAAGATATCGAGAAGGGCATTGAGAAGGAGAGGAGAAAGAGGGAGAACCCTGAAGCTATGGAAGAGGATGAGGATGAAATTGATGAGGTTGCTGAGATAAAGCCAGCACATTTCGAGGAATCCATGAAGTTTGCTCGCAGAAGTGTCAGTGATGCTGATATCAGGAAGTACCAACTCTTTGCTCAGACCTTGCAGCAGTCTCGTGGATTTGGATCGGAATTTCGGTTTGCAGATCGAACTGAGAACACTTCAACTGGAGCTGCGGACCCTTTCTCTTCTGCTGCTGCGGGAGACGATGATGATCTATACAGTTAA 2448 0.4367 MADSASSITKKSGPSSDSKSNRDYSTAILERKKAPNRLVVDEAINDDNSVVTLHPSTMEKLQFFRGDTVLIKGKKRRDTVCIVLTDEQCEESKVRMNKVVRANLRVRLGDVVSVNQCADVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLIRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAKAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVIVIGATNRPNSVDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLADDVDLEKVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNDHFQTALGASNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRLQIFKACLRKSPVSKDVDLTALARFTHGFSGADITEICQRACKYAIREDIEKGIEKERRKRENPEAMEEDEDEIDEVAEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRTENTSTGAADPFSSAAAGDDDDLYS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5051g00002 815 CDD RecA-like_CDC48_r1-like 216 381 - -
Pral5051g00002 815 Gene3D - 383 474 - -
Pral5051g00002 815 FunFam Transitional endoplasmic reticulum ATPase 15 119 - -
Pral5051g00002 815 Gene3D - 15 119 - -
Pral5051g00002 815 Pfam ATPase family associated with various cellular activities (AAA) 252 381 IPR003959 GO:0005524|GO:0016887
Pral5051g00002 815 Pfam ATPase family associated with various cellular activities (AAA) 525 658 IPR003959 GO:0005524|GO:0016887
Pral5051g00002 815 MobiDBLite consensus disorder prediction 1 24 - -
Pral5051g00002 815 SUPERFAMILY Cdc48 domain 2-like 119 211 IPR029067 -
Pral5051g00002 815 SMART CDC48_N_2 37 120 IPR003338 -
Pral5051g00002 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 773 IPR027417 -
Pral5051g00002 815 Gene3D - 217 381 IPR027417 -
Pral5051g00002 815 ProSitePatterns AAA-protein family signature. 628 646 IPR003960 GO:0005524|GO:0016887
Pral5051g00002 815 MobiDBLite consensus disorder prediction 1 23 - -
Pral5051g00002 815 FunFam Transitional endoplasmic reticulum ATPase 213 381 - -
Pral5051g00002 815 Pfam Cell division protein 48 (CDC48), N-terminal domain 37 118 IPR003338 -
Pral5051g00002 815 CDD RecA-like_CDC48_r2-like 496 656 - -
Pral5051g00002 815 FunFam Cell division control 48 383 474 - -
Pral5051g00002 815 ProSitePatterns AAA-protein family signature. 352 370 IPR003960 GO:0005524|GO:0016887
Pral5051g00002 815 SMART AAA_5 248 384 IPR003593 GO:0016887
Pral5051g00002 815 SMART AAA_5 521 660 IPR003593 GO:0016887
Pral5051g00002 815 NCBIfam CDC48 family AAA ATPase 38 776 IPR005938 GO:0016787
Pral5051g00002 815 SUPERFAMILY ADC-like 34 117 IPR009010 -
Pral5051g00002 815 Gene3D - 475 658 IPR027417 -
Pral5051g00002 815 Pfam AAA+ lid domain 404 446 IPR041569 -
Pral5051g00002 815 Pfam AAA+ lid domain 680 720 IPR041569 -
Pral5051g00002 815 PANTHER AAA-FAMILY ATPASE 451 778 - -
Pral5051g00002 815 Gene3D - 662 772 - -
Pral5051g00002 815 SMART CDC48_2_2 137 203 IPR004201 -
Pral5051g00002 815 FunFam Cell division control 48 120 216 - -
Pral5051g00002 815 MobiDBLite consensus disorder prediction 782 815 - -
Pral5051g00002 815 Pfam Cell division protein 48 (CDC48), domain 2 139 202 IPR004201 -
Pral5051g00002 815 FunFam Transitional endoplasmic reticulum ATPase 475 658 - -
Pral5051g00002 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 473 IPR027417 -
Pral5051g00002 815 Gene3D - 120 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5051g00002 Pral-Chr5051 9121 13629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5051g00002 517 716 Calmodulin-binding Proteins AT3G56690 42.365 2.10e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5051g00002 K13525 - gmx:100798680 1475.3