LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5050g00001	ATGGTTCCATCATTGCAACCAACCGGTTTCCAGGAGGAATTCACGTCACAGTCTCACTACGTGGCTCCTGTAAGCTGGGCATCCTCAATTGGACCGGAGCAATTAGCACAGTCCATTTCTTCTTCATCGGCGGTAGATGCTCCGTCGTCACTGATGGTGAAGGTTCAGAGAGTGGAAGCCCGATTGGACGAGGACGAGCAGGATTCTAAAAAACTTCGCGCTAAAATCTTTTGCCATCCTTTGTATCCTAAACTTCTGGATGCTTACATCGATTGCCAAAAGGTTGGAGCACCGCCGGAGATGGTAAAACTGTTCGACGAACTCGGACTAGAGAATGGCGATCTATGTCAGAGATCTACTTACTTGGGTGCCGACCCCGAGCTGGATGAATTCATGGAAACGTATTGCGATTTATTGGTGAAGCACAAATCGGATCTCTCGAAGCCTTTTGATGAAGCAACCGCGTTTCTTAACGACATGGAAATGCAGCTTAACTCTCTCTGCAACGGCCCTCCCCGGAACTGCAATTCTGATGAAGGTACTGGATCATCCGATGATGACACCAGTAGGGAAGAGAAAGAAGAAAACGAGTCTAAGAGGATCATTGAAGATCGAGAGTTGAAGGATAAACTCCTTCGTAGATATAGCGGATATATTATTGGTCTCAAGCATGAATTTTCCAAAAAGAAGAAGAAAGAGAAGCTACCCAAAGAAGCGAGGCAAATATTGCTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCGACGGAAGCGGATAAGGTTGCATTAGCTGAATGGACGGGTCTGGATCAAAAGCAGATAAACAATTGGTTTATAAACCAGAGGAAGCGCCACTGGAAGCCAGCGGAGGAAATGCAAGCAGCAGTTTTGGATGGCCTATATGGACCTTTTTCCACGAGTGATTGA	930	0.4624	MVPSLQPTGFQEEFTSQSHYVAPVSWASSIGPEQLAQSISSSSAVDAPSSLMVKVQRVEARLDEDEQDSKKLRAKIFCHPLYPKLLDAYIDCQKVGAPPEMVKLFDELGLENGDLCQRSTYLGADPELDEFMETYCDLLVKHKSDLSKPFDEATAFLNDMEMQLNSLCNGPPRNCNSDEGTGSSDDDTSREEKEENESKRIIEDRELKDKLLRRYSGYIIGLKHEFSKKKKKEKLPKEARQILLAWWNIHFKWPYPTEADKVALAEWTGLDQKQINNWFINQRKRHWKPAEEMQAAVLDGLYGPFSTSD	309

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5050g00001	309	SMART	KNOX1_2	70	114	IPR005540	GO:0003677\|GO:0005634
	Pral5050g00001	309	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	88	295	-	-
	Pral5050g00001	309	Pfam	Homeobox KN domain	246	285	IPR008422	GO:0003677\|GO:0006355
	Pral5050g00001	309	SMART	ELK_2	206	227	IPR005539	GO:0003677
	Pral5050g00001	309	ProSiteProfiles	'Homeobox' domain profile.	226	289	IPR001356	GO:0003677
	Pral5050g00001	309	Pfam	KNOX2 domain	123	168	IPR005541	GO:0003677\|GO:0005634
	Pral5050g00001	309	Pfam	KNOX1 domain	72	111	IPR005540	GO:0003677\|GO:0005634
	Pral5050g00001	309	CDD	homeodomain	240	289	IPR001356	GO:0003677
	Pral5050g00001	309	ProSitePatterns	'Homeobox' domain signature.	264	287	IPR017970	GO:0000981\|GO:0006355
	Pral5050g00001	309	MobiDBLite	consensus disorder prediction	168	182	-	-
	Pral5050g00001	309	SMART	KNOX2_2	118	169	IPR005541	GO:0003677\|GO:0005634
	Pral5050g00001	309	MobiDBLite	consensus disorder prediction	168	199	-	-
	Pral5050g00001	309	Coils	Coil	55	75	-	-
	Pral5050g00001	309	ProSiteProfiles	ELK domain profile.	206	226	IPR005539	GO:0003677
	Pral5050g00001	309	Gene3D	-	224	297	-	-
	Pral5050g00001	309	SUPERFAMILY	Homeodomain-like	227	301	IPR009057	-
	Pral5050g00001	309	MobiDBLite	consensus disorder prediction	183	199	-	-
	Pral5050g00001	309	Pfam	ELK domain	206	227	IPR005539	GO:0003677
	Pral5050g00001	309	SMART	HOX_1	228	293	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5050g00001	Pral-Chr5050	20766	28657	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5050g00001	27	307	Homeobox Transcription Factor Family	AT1G23380	55.479	1.11e-95	284

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Pral5050g00001		KNOX2	4.7e-23	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5050g00001	-		-	qsa:O6P43_022694	359.377