Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5049g00032 ATGGATCTGGAAACAAAGAGCAGAGAAAACTATGTCTCCCAGCAGCCAATGCAGTTGCAACAAATGGGTGCAAAATCCAAATTAAAAGATCTCGAGTTTCCTATTTTTGGGGTTCCTTCATCACAAGGTAATTCCCTGCAAGGTTTACTCCATATAGATCCATTTCAAGTATATGGATCTTCATCAAATCCAGTAACTGGGGTGCAAACTGCAAATTTTGTTAACCCTTTTGATAGTTTCTCCTTTGGCTGTTCATCAGCAGATTTTGATGTTTATGAGTCAAAACCATTTACTGAAAATATTAATGCCAATAAAGCTGGTCATGCACATGTTATGGAGAATTTCCACTTCGGAGGTAATAATTATAGCCTCAACGTCTCTCACGAGAGAAATCAAATGGAAATGGTGGATGCAAACCTAAGCAATTATTGTTTGCCGTTTGATCACTCTCAAGAAACCAAGCCTATGAATTTTGTAGTACCAGATGATGAAATCTCAATCATATCTCCCGATCACAGTTTTCTCAGAAGGGTTGGCTTGAATAATAGGAATAGAAGGTTATCAACTTCAATCAGAAGGGCATGCAAAGTTCGGAACAAGTCCAACGTAGTAAAGGGACAATGGTCGGTGGAAGAAGATAGGCTGCTAATTCAACTGGTTGAACAATACGGAGTGAGAAAGTGGTCTCTTATTGCTCAGAGTTTGCCAGGGAGAATAGGAAAACAATGTCGAGAGCGTTGGCATAATCACTTAAGGCCTAACATCAAGAAGGACACATGGAGTAATGAAGAGGATAAGGTACTGATCGAAGCACACGTAGAGATAGGAAATAAATGGGCAGAGATTGCTAAGAAGTTGCCGGGAAGAACTGAAAACTCCATTAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCAAAAAGAAAGTGTCGCTCGAAGTGCCCTAAGCCCTCGCTTCTTCAGGAATACATCAAGAGCTTGAACTTAGACAGAAACCCACCCATAGATTATCGGAAAAGATCCTCTTCTTCTGCTAACCGTAACAACAATAACAATCCTATGACTGGTAGGAGGAAAGCATCAGCAACACCAGCAAGTGAGCAGTTTTGTCCCGACATTGACAGATTGGTTCCTACATATGACTTTAACGAGGTCGTCCCAGACTTTTGTTTCGATGAGAACATAACTTTGTTTCAAGAGGGATGCAATCTTGATTCTTTGCTTGATGATATGCCTTGTGCTCCTGATCATACTGTGCATCGAGGAGACTTTGAAGTAAAGTTGCAATTTTGTGGCGATGACGTTGTTGATAATACTATTGATCTTGATGGGGATGATCAGTTTGATTCAGAGAAATCACAGAATGAGAATGTGGAAGTTAAGCGGGAGATGGATTTGATGGAGATGATGTCTCAGATGAAAGATGTTCTTTGA 1437 0.4022 MDLETKSRENYVSQQPMQLQQMGAKSKLKDLEFPIFGVPSSQGNSLQGLLHIDPFQVYGSSSNPVTGVQTANFVNPFDSFSFGCSSADFDVYESKPFTENINANKAGHAHVMENFHFGGNNYSLNVSHERNQMEMVDANLSNYCLPFDHSQETKPMNFVVPDDEISIISPDHSFLRRVGLNNRNRRLSTSIRRACKVRNKSNVVKGQWSVEEDRLLIQLVEQYGVRKWSLIAQSLPGRIGKQCRERWHNHLRPNIKKDTWSNEEDKVLIEAHVEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKCPKPSLLQEYIKSLNLDRNPPIDYRKRSSSSANRNNNNNPMTGRRKASATPASEQFCPDIDRLVPTYDFNEVVPDFCFDENITLFQEGCNLDSLLDDMPCAPDHTVHRGDFEVKLQFCGDDVVDNTIDLDGDDQFDSEKSQNENVEVKREMDLMEMMSQMKDVL 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5049g00032 478 FunFam Transcription factor MYB119 258 322 - -
Pral5049g00032 478 FunFam Transcriptional activator Myb isoform A 204 257 - -
Pral5049g00032 478 MobiDBLite consensus disorder prediction 293 314 - -
Pral5049g00032 478 CDD SANT 259 302 IPR001005 -
Pral5049g00032 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 255 IPR017930 -
Pral5049g00032 478 CDD SANT 208 251 IPR001005 -
Pral5049g00032 478 Gene3D - 258 325 - -
Pral5049g00032 478 ProSiteProfiles Myb-like domain profile. 200 251 IPR001005 -
Pral5049g00032 478 PANTHER MYB PROTEIN-RELATED 182 358 - -
Pral5049g00032 478 SUPERFAMILY Homeodomain-like 202 298 IPR009057 -
Pral5049g00032 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 306 IPR017930 -
Pral5049g00032 478 MobiDBLite consensus disorder prediction 332 367 - -
Pral5049g00032 478 Gene3D - 204 256 - -
Pral5049g00032 478 SMART sant 256 304 IPR001005 -
Pral5049g00032 478 SMART sant 204 253 IPR001005 -
Pral5049g00032 478 MobiDBLite consensus disorder prediction 339 363 - -
Pral5049g00032 478 ProSiteProfiles Myb-like domain profile. 252 302 IPR001005 -
Pral5049g00032 478 Pfam Myb-like DNA-binding domain 208 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5049g00032 Pral-Chr5049 186948 188980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5049g00032 64 413 MYB Transcription Factor Family AT4G18770 48.774 1.05e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5049g00032 Myb_DNA-bind_6 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5049g00032 K09422 - qsa:O6P43_022705 481.1