Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5049g00026 ATGGATTTTTCTCCTTTGCACGAGCACGTCTGCATGGAATCTTCTGATCATTGGCTTCAGGGCGCAGTTCAAGAGGAATCTGCAGGAGGATTGGATTCTTCATCTTCTTCTCCACCATTACTGGAGAGGAGGGTGAGGCCAGCCCCAGCGGACCAAGCGTTGAAGTGTCCGAGGTGTGAGTCAACAAACACCAAGTTCTGCTACTACAACAACTATAGTCTCTCTCAGCCAAGGTACTTCTGCAAAACTTGCAGAAGGTACTGGACCAAAGGAGGCACATTGAGAAACATCCCAGTAGGCGGAGGTTGCAGAAAGAACAAGAAAGTCTCATCCAAGAAATTCAACGACACTGTTCATACACAGTCAGAACCCAAAGATCTTCAACTCACAGCCTCTAATTTCCCATCAGATCATGCCATGCATTTTCCCCACTCTGTGGGACTAATGATGGAGAATTCCAGGCTCATGGAAACTAACTTTGGAGGGATAAATAATGTTATGGGAAATATTGGCGATACTGGGATTGCAGATCAGATAAATTATGGCCGCAATGGGTTATTGGCGCAGAATTTCCAGGGTTTTGGAGGAAATATGTGTTACTTTGATGGCTATAACAGTAATGGTGGGGCTTATAGCACATTGGACTCTTTTTACCATGGCAGTGAAGATCAAAATGTTGGTGGAATTATTCCTGATGTGAAGCCAAATCCTAAGTTATTGTCTCTCGAATGGCAAGACCAAGGTTGTTCTGATGCTGGGAAAGAACCTTTTGGTTATATCAACACCACTTTGGGATCATGGACTGGCATGATCAATGGTTATGGACCCTCCACAACACACCCTTTGATCTAA 852 0.4448 MDFSPLHEHVCMESSDHWLQGAVQEESAGGLDSSSSSPPLLERRVRPAPADQALKCPRCESTNTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKFNDTVHTQSEPKDLQLTASNFPSDHAMHFPHSVGLMMENSRLMETNFGGINNVMGNIGDTGIADQINYGRNGLLAQNFQGFGGNMCYFDGYNSNGGAYSTLDSFYHGSEDQNVGGIIPDVKPNPKLLSLEWQDQGCSDAGKEPFGYINTTLGSWTGMINGYGPSTTHPLI 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5049g00026 283 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
Pral5049g00026 283 Pfam Dof domain, zinc finger 51 108 IPR003851 GO:0003677|GO:0006355
Pral5049g00026 283 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 143 IPR045174 GO:0003700|GO:0006355
Pral5049g00026 283 MobiDBLite consensus disorder prediction 25 46 - -
Pral5049g00026 283 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5049g00026 Pral-Chr5049 148784 150082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5049g00026 31 124 C2C2-Dof Transcription Factor Family AT5G60200 64.894 9.51e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5049g00026 zf-Dof 6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5049g00026 - - pcin:129309705 506.138