Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5047g00040 ATGCCAAAAACACAGAGAGGGGGAGAGAGAAGCTTGTTGCTAGCTAACTGCAGATATAGAAAATTAGGAATGAGAAAGCCTTGCTGTGACAAAGAAGACACCAACAAAGGAGCTTGGTCTAAACAAGAAGACCAAAAGCTCATCGATTACATCCAAACCCATGGCGAAGGTTGCTGGCGTTCCCTTCCCAAAGCTGCAGGGCTGCATCGTTGTGGAAAGAGTTGCAGGTTGAGATGGATAAATTATCTGAAGCCAGATATCAAACGGGGAAACTTTGCCCAAGACGAAGAAGACCTCATCATCAAGCTCCATGCCCTCCTCGGCAACCGGTGGTCCCTGATAGCTGGAAGGTTGCCTGGGAGAACAGATAATGAGGTTAAGAACTACTGGAATTCTCACATCCGCAGGAAGCTGATAAAGATGGGGATAGATCCTGATAACCATAAGCTTTTTCATCTTCATCACCAATGCTTTCCTCTTCTTCATCGTCCTCGTACTGATGTTGATAAAGATGATGATGCCCTACCTGTTTCTTCTGCTGCTGCAACATCCGCCGACTCCTTCAAGGAAAAACCTAATTCTTCCAACAACTTGAATCTTGACCTCACTATTGCTTTTCCTTCTGGCACACCGAACCCAAACTCTGCTGAGTCATCCCACAACAATAATACTGCTAAGGACATGGATCAGAGCCAATCAGCTCCAACCCTTCCTCTATTTAACTAG 726 0.4559 MPKTQRGGERSLLLANCRYRKLGMRKPCCDKEDTNKGAWSKQEDQKLIDYIQTHGEGCWRSLPKAAGLHRCGKSCRLRWINYLKPDIKRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPDNHKLFHLHHQCFPLLHRPRTDVDKDDDALPVSSAAATSADSFKEKPNSSNNLNLDLTIAFPSGTPNPNSAESSHNNNTAKDMDQSQSAPTLPLFN 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5047g00040 241 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Pral5047g00040 241 FunFam MYB transcription factor 90 150 - -
Pral5047g00040 241 CDD SANT 91 134 IPR001005 -
Pral5047g00040 241 SMART sant 35 85 IPR001005 -
Pral5047g00040 241 SMART sant 88 136 IPR001005 -
Pral5047g00040 241 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Pral5047g00040 241 CDD SANT 38 83 IPR001005 -
Pral5047g00040 241 Gene3D - 91 155 - -
Pral5047g00040 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Pral5047g00040 241 SUPERFAMILY Homeodomain-like 34 130 IPR009057 -
Pral5047g00040 241 Gene3D - 36 88 - -
Pral5047g00040 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Pral5047g00040 241 MobiDBLite consensus disorder prediction 180 241 - -
Pral5047g00040 241 FunFam MYB-related transcription factor 35 88 - -
Pral5047g00040 241 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 24 222 - -
Pral5047g00040 241 Pfam Myb-like DNA-binding domain 89 133 IPR001005 -
Pral5047g00040 241 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5047g00040 Pral-Chr5047 299725 301367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5047g00040 25 208 MYB Transcription Factor Family AT4G09460 53.846 7.12e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5047g00040 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5047g00040 K09422 - tcc:18601922 291.582