Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5047g00038 ATGGACATTTCTTCTTCTTCTTCTTCTCCCTCCTCTTCTTCCTCCTCCTCCGGCGCTCTCAGTCCTGACGCTACCCTTGATGCCGACACTCCCCGAACCCCTCTTGCTGTCCGGCGAGCCCTCCAGCTACTACAATCTGACGACCCCGATTTCAAGCTCCAAGCCGCTCGCGATATTCGCCGCCTCACCAAAACCTCCCAGCGTTGTCGCCGCCAGCTCTCTCAGGCTGTCGGTCCACTCGTTTCCATGCTCCGACTCGACTCGTCTGAGTCCCACGAACCTGCTCTTCTCGCTTTGCTCAACCTTGCCGTCAAAGACGAAAAGAACAAAATCAGCATTGTGGAAGCTGGTGCTTTAGAACCAATAATTTCTTTCCTGAAGTCACAAAATACAAACCTACAAGAGTGCGCCACGGCATCTTTGCTCACTTTATCCGCCTCTGCAACCAATAAACCAATCATTTGTGCTTCTGGAGCCATTCCTCTTCTCGTGGAGATCCTCAGAGATGGAAGCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTTTCCAATTTATCCACCCGCACTGACAATCTCAGGGCCATTCTTGAAACAAATCCGATCCCTTTCATAGTTGATCTTCTCAAAACCTGTAAAAAATCTTCAAAAACAGCCGAGAAATGCTGTGCTTTGATAGAATCCTTGGTGGGTTTTGACGAGGGGAGGACTGCCTTGACATCCGAAGAAGGCGCAGTTCTTGCAGTTGTTGAAGTTCTTGAAAATGGCAATCTCCAGAGCAGGGAGCACGCAGTTGGAGCGTTGTTAACAATGTGCGAAAGTGATCGATGTAAATACAGGGAACCGATTCTTAGAGAAGGTGTAATTCCAGGACTTCTGGAGCTCACGGTTCAGGGAACACCCAAGTCTCAGTTAAAAGCCCGCAACCTTTTGCAGTTACTGAGAGAATCTCCTTATCCCAGATCCGAAATTCAACCGGACACTCTTGAGAACATAGTATGCAATATTATATCCCAGATTGATGGGGATGATCAGTCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTGAGACATTTGCAGCAAAGGGCTCTTGTGTTCACCCCCACAAGTGATCGGCCTATTGCTAAATGTGCTTCTGAAGTATCTTCAAAATGA 1179 0.4818 MDISSSSSSPSSSSSSSGALSPDATLDADTPRTPLAVRRALQLLQSDDPDFKLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRLDSSESHEPALLALLNLAVKDEKNKISIVEAGALEPIISFLKSQNTNLQECATASLLTLSASATNKPIICASGAIPLLVEILRDGSPQAKADAVMALSNLSTRTDNLRAILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVGFDEGRTALTSEEGAVLAVVEVLENGNLQSREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARNLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVFTPTSDRPIAKCASEVSSK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5047g00038 392 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 159 IPR000225 GO:0005515
Pral5047g00038 392 FunFam U-box domain-containing protein 4 23 373 - -
Pral5047g00038 392 SUPERFAMILY ARM repeat 37 341 IPR016024 -
Pral5047g00038 392 Gene3D - 35 153 IPR011989 -
Pral5047g00038 392 MobiDBLite consensus disorder prediction 1 32 - -
Pral5047g00038 392 PANTHER U BOX DOMAIN-CONTAINING 21 319 - -
Pral5047g00038 392 Gene3D - 154 370 IPR011989 -
Pral5047g00038 392 SMART arm_5 106 146 IPR000225 GO:0005515
Pral5047g00038 392 SMART arm_5 231 272 IPR000225 GO:0005515
Pral5047g00038 392 SMART arm_5 147 187 IPR000225 GO:0005515
Pral5047g00038 392 SMART arm_5 188 230 IPR000225 GO:0005515
Pral5047g00038 392 SMART arm_5 65 104 IPR000225 GO:0005515
Pral5047g00038 392 MobiDBLite consensus disorder prediction 1 23 - -
Pral5047g00038 392 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Pral5047g00038 392 Pfam Armadillo/beta-catenin-like repeat 150 186 IPR000225 GO:0005515
Pral5047g00038 392 Pfam Armadillo/beta-catenin-like repeat 107 141 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5047g00038 Pral-Chr5047 272450 275981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5047g00038 37 314 U-box Gene Family AT2G23140 34.286 2.47e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5047g00038 - - gmx:100780954 609.757