Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5047g00037 ATGTCGCTTGAGTACCACAACTCTGTACGCGGTGAAGAACATGCGTTTAGCAACGATTCTGCCATAACCCAATATTCTCCTTCTCCTCCTATGAGTGGGACTGGAAATGGGTTTGTTTATAAGGCCACAAGCAATGATCCAGAGGAAACAAAATCTCTCATCAACTTCAAAGCCAATGGTGGGTACAGTGCTGTCATTAATGGTGGTGAATCTTTGCTTAGCTTTCAGCAGAAAGAGTACTGTTTGTGGGAGAATAGTGGCTTTCATCAGTGGAATCAGATCAGTCACAGAAGCAATTCAGACCCATCAAGACTGATTCAGGATTTTAATTGCATTCAAACTGCTAGTGGCTATGGAGGACCAAAAGAGCAGCAGCAGCAAGGTGAGAGTTCATCATATGGGTGGCTATACTCTGAACCAAATGTTCCTTCTGATGGTAGCCTTCAGGATTCTTCACCAAGAGCAAAAGAAGCATCCTTCCATAAGCGCCCTTCAATGGGAGAGAGCGCGCAAGCCTCAAAGAAGCAATGCACTGCTAGTGGTGCTGCAAGTAAAACACCAAAACCAACAAAGTCAAACCCATCTAAGGATCCTCAGAGTGTAGCAGCCAAGAACAGAAGAGAGAGGATAAGCGAGCGACTCAAGATACTTCAAGAACTAGTTCCTAATGGCTCCAAGGTTGATTTGGTGACCATGCTGGAGAAAGCCATTAGTTATGTGAAGTTTCTTCAATTGCAAGTGAAGGTACTGGCAACTGATGAATTTTGGCCAGTCCAAGGAGGAAAAGCACCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCCATTCTTTCTCGTCCCAGAAAGACAGAAACTCAACCTCCAAGCACCAGAAATGATCATTAA 885 0.4395 MSLEYHNSVRGEEHAFSNDSAITQYSPSPPMSGTGNGFVYKATSNDPEETKSLINFKANGGYSAVINGGESLLSFQQKEYCLWENSGFHQWNQISHRSNSDPSRLIQDFNCIQTASGYGGPKEQQQQGESSSYGWLYSEPNVPSDGSLQDSSPRAKEASFHKRPSMGESAQASKKQCTASGAASKTPKPTKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEAIDAILSRPRKTETQPPSTRNDH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5047g00037 294 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 90 252 IPR045843 GO:0003700|GO:0006355
Pral5047g00037 294 SMART finulus 200 249 IPR011598 GO:0046983
Pral5047g00037 294 Gene3D - 189 251 IPR036638 GO:0046983
Pral5047g00037 294 MobiDBLite consensus disorder prediction 116 206 - -
Pral5047g00037 294 FunFam Transcription factor bHLH83 192 251 - -
Pral5047g00037 294 Pfam Helix-loop-helix DNA-binding domain 204 244 IPR011598 GO:0046983
Pral5047g00037 294 CDD bHLH_AtIND_like 195 257 - -
Pral5047g00037 294 MobiDBLite consensus disorder prediction 116 154 - -
Pral5047g00037 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 253 IPR036638 GO:0046983
Pral5047g00037 294 MobiDBLite consensus disorder prediction 169 200 - -
Pral5047g00037 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5047g00037 Pral-Chr5047 256428 257772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5047g00037 37 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 46.899 9.91e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5047g00037 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5047g00037 - - gmx:100810010 287.73