Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5047g00025 ATGGAGAAGATCAACTCAGAAGTGAGGAAAGGTGCCTGGACCCAAGAGGAGGACAATCTTCTCAGAACTTGCGTTCAAAAGTATGGCGAGGGAAAGTGGAATCTGGTTCCTCAAAGAGCTGGTTTGAAGAGATGCAGGAAAAGTTGTAGAATAAGGTGGTTGAATTACCTGAAACCCAACATCAACAGAGGAAACTTCACGGAAGACGAGGTTGATATAATTGAAAGGTTCCATAAGCTTCTCGGCAACAGATGGTCTTTGATAGCCGGGAGGCTACCGGGAAGAACAGCGAATGACGTGAAGAACTTCTGGCACACCAAAATGCGCAGTAAGAGAGAAGAAAATCAGAGGAAGAAAGCAAAAGATCAGGTGAAGATGGCAGAGGAGAAAACGAAAGTAACACGGCACGTAGTAATAAAACCTCGACCTCATACTTTCTCTGAGAATTCGCCATGGCTGAGGAAGAATAAGAATAAACTTGTTTCTGCATGTGAAAGTGGTGATACCAATAAGGCTTCTGCCAGTTCTGCACGGCCATGCCCTCCTGCCGATTCTAGTAAGAGCGCCGAGTCAGACGAGTGGTGGGAGAGTTTACTGAACAAGGAAGGAGATGAGGGGCAAGAGGGGAATTCTATGATGGAGTTTTTTGACCCAGACTTTCTCAAGATGGAGGGTCTCCACAGTTGGTGGGGTCACTGTATATGA 705 0.461 MEKINSEVRKGAWTQEEDNLLRTCVQKYGEGKWNLVPQRAGLKRCRKSCRIRWLNYLKPNINRGNFTEDEVDIIERFHKLLGNRWSLIAGRLPGRTANDVKNFWHTKMRSKREENQRKKAKDQVKMAEEKTKVTRHVVIKPRPHTFSENSPWLRKNKNKLVSACESGDTNKASASSARPCPPADSSKSAESDEWWESLLNKEGDEGQEGNSMMEFFDPDFLKMEGLHSWWGHCI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5047g00025 234 Gene3D - 10 62 - -
Pral5047g00025 234 MobiDBLite consensus disorder prediction 165 193 - -
Pral5047g00025 234 FunFam Myb transcription factor 10 62 - -
Pral5047g00025 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Pral5047g00025 234 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pral5047g00025 234 CDD SANT 12 57 IPR001005 -
Pral5047g00025 234 CDD SANT 65 106 IPR001005 -
Pral5047g00025 234 MobiDBLite consensus disorder prediction 110 131 - -
Pral5047g00025 234 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 197 - -
Pral5047g00025 234 MobiDBLite consensus disorder prediction 165 182 - -
Pral5047g00025 234 SMART sant 62 110 IPR001005 -
Pral5047g00025 234 SMART sant 9 59 IPR001005 -
Pral5047g00025 234 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Pral5047g00025 234 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Pral5047g00025 234 Gene3D - 65 138 - -
Pral5047g00025 234 Coils Coil 110 130 - -
Pral5047g00025 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Pral5047g00025 234 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Pral5047g00025 234 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5047g00025 Pral-Chr5047 177817 179428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5047g00025 8 148 MYB Transcription Factor Family AT1G66370 59.859 7.29e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5047g00025 Myb_DNA-binding 5.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5047g00025 - K16166 pcin:129304058 288.885