Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5047g00024 ATGGAGAAGAACACAATAGGTGCGTTGAGGAAAGGTACCTGGACCCAAGAGGAAGATAATCTTCTCAGAGACTGCATTCATCAGTACGGCGAAGGAAAATGGCATCTTGTTCCTCAAAGAGCTGGTTTGAAGAGATGCAGGAAAAGCTGCAGAATGAGGTGGTTGAATTATCTGAAACCCAACATCAAGAGAGGAGGCTTCAATGAAGACGAGGTTGATATGATTCGAAGGTTTCATAAGCTTCTGGGCAACAGATGGTCGTTGATAGCTGGAAGGCTGCCTGGAAGAACAGCGAACGATGTGAAGAACTTCTGGCACACCAACATGCGGAATAGGAAGAAAGAAGAAACCCAGGAGACGAAAGCAAAAGAGGTGGTGGTGATGAAGAATAATGCAGAGGAGACGGCACATCAAGGAAAACAGCACGTAGTGATAAAGCCTCAGCCTCACACTTTCTCTAAGAATTCGCCATGGCTGAGGAGGAATCATAACAATAATAATAATAAGCTTGTTTCTGCGAGTGAAGGTGGTGATGCTGCAGAAGCCACAACTTCAGGTCCTGGTGTTATGAAAGAGGGTATTGCAGACCCATGTGCTGCTGCTGATGATTTTATGCACAGAGACCAGTCAGAAGAGTGGTGGGAGAGCTTACTAAACAATGATAGAGATGAAGGGCAATTTGGGAATTTCACCATGGACTTTTGGGACGATGATCTTCTGAAAAGTGAAACAAAGTCTATCTGGGGAAACGCGGAATGA 759 0.4506 MEKNTIGALRKGTWTQEEDNLLRDCIHQYGEGKWHLVPQRAGLKRCRKSCRMRWLNYLKPNIKRGGFNEDEVDMIRRFHKLLGNRWSLIAGRLPGRTANDVKNFWHTNMRNRKKEETQETKAKEVVVMKNNAEETAHQGKQHVVIKPQPHTFSKNSPWLRRNHNNNNNKLVSASEGGDAAEATTSGPGVMKEGIADPCAAADDFMHRDQSEEWWESLLNNDRDEGQFGNFTMDFWDDDLLKSETKSIWGNAE 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5047g00024 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pral5047g00024 252 CDD SANT 67 109 IPR001005 -
Pral5047g00024 252 Gene3D - 8 64 - -
Pral5047g00024 252 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Pral5047g00024 252 FunFam Myb transcription factor 11 63 - -
Pral5047g00024 252 SMART sant 10 60 IPR001005 -
Pral5047g00024 252 SMART sant 63 111 IPR001005 -
Pral5047g00024 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Pral5047g00024 252 Pfam Myb-like DNA-binding domain 64 107 IPR001005 -
Pral5047g00024 252 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Pral5047g00024 252 ProSiteProfiles Myb-like domain profile. 9 58 IPR001005 -
Pral5047g00024 252 Gene3D - 66 142 - -
Pral5047g00024 252 MobiDBLite consensus disorder prediction 172 194 - -
Pral5047g00024 252 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Pral5047g00024 252 CDD SANT 13 58 IPR001005 -
Pral5047g00024 252 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 9 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5047g00024 Pral-Chr5047 165333 166291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5047g00024 8 221 MYB Transcription Factor Family AT1G66370 48.402 2.35e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5047g00024 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5047g00024 - K16166 pcin:129304058 330.872