LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5041g00016	ATGGCGCTTCAACTTGCAGCACCATCTTCTGGCCTTACCAGCGAAACAAAGTATCGATATGATGTGTTCCTGAGTTTCAGAGGCGAAGATACTCGCCACTCCTTCACTGTGATTCTCTACAATGCCTTGCGCCGGAAGGGAGTCAATGCCTTCATTGATGACAAGAAGCTTGGGAAAGGGAAACGAATATCACCTGCGCTTCTCAAGGCCATCGAAAAATCCAGGATTTCGATCATTGTCTTCTCTAGGAACTACGCTACTTCCTCATGGTGCCTGGATGAACTTGACCACATCATTCAGTGTAAGAAGAAGAAGAACCAGCTGGTTATGCCGATTTTTTATAAGGTGAATCCGATGGATGTACAATATCAGACAAATAGCTTTGGGGAAGCCATGGCTGCCCATGAAAATAGGTTCAGAAATGATCTGGAGAAAGTGCGCAAATGGAGGTCTGCTTTGTCTGAAGCTGCTAGTTTGTCATCGGCATGGCTTTTTGAAGATGGAAATGAATCTGGATTTATTGAAAGGATTGTTGAAGATGCATATACTGTGCTACCTCCAAAACGCCTACATAGCACTGGTCACATTGTTGGACTTGAGTCCTGCATAGAAGAAGTGATATCACTTCTGGATCAATCTGATGATGGAGTTTGTATGCTGGGGATTTATGGAACTGGTGGTGTTGGCAAAACAACTCTTGCCAAGGCTTTGTATAATTTAATCTTCCACCAATATGAAGGTGCCTGTTTTCTATTTGATGTAACAGACGCTTCAAAGCAGTACCGAGGCATGGTTCATCTCCAACAGACACTTCTATCAGAGATTCTTGAGGAAAGGATCAAGTTGGGCAGTGTTGATGAAGGAATATCTAAAATGAAACACAGGCTCTCTCACAAAAGAGTTCTTTTGGTTCTTGATGATGTTGATGAGCTAGAACACCTAGAAAAACTCGCAGGAAGCTCTGATTGGTTTGGTTCTGGAAGCAAGGTCATCATAACCACAAGAAATAAGCAATTACTAATTGCACATCGTGTTGAAACAGCTTATGAAATGAAGAAGCTAAATGATCATGATGCTTTGGAACTCTTTTGTTGGCATGCCTTCCATACGAGCAAACCTCCAAAATGTTATCAAGATATGTCTAGTCGTTTAATAGGTTACGCACAGGGTCTTCCTTTGGCTTTAAGGGTAATAGGTTCCAATTTGGCTCAAAAGAACTTAGAAGAATGGAGAATTACACTTGAACAGTATGAAAGAATTCCAGAAAAAACAGTTCATGAGGTGCTAAAGATAAGCTATGATTGCTTACAGGATACTGCTAAGAGTATTTTCTTAGATATTGCTTGTTTCTTCAAGAATAGTATGGAATATATTGAAGAAATACAAGAAGCTTATAATTATGGGGCAAGGTTTTTTATTGAAGTGCTTGTTGATAAATCTCTTATAACTGTCAGTAATAATGGCCGGTTTTGGATGCATGATCTGATACAAAAAATGGGTAGAGAGATTGTTAGGCAAGAGGCACCATCAAATCTAGGTAAGCGCAGTAGACTATGGTATTACGGGGATGTTCTGAGAGTATTGCATGAAAATTTGGGAAGTGGTAATATTGAAGGAATAATGCTCGATCCACCTCAACAAGAAGAAGTGGAGTGGAATGGTACTGCCTTTAAGAATATGAGTAATCTTAGAATTCTTATTGTTCGAAATGCCAAGTTTTCTATGGGTGCTAAATATTTTCCAAGTAGTTTAAGATTGCTTGACTGGGATGGTTACCCTTCTATGACTCTACCACCAGATTTTTACCCTAAAAATCTAGTTTGCTTCAAGTTATGTGGTAGTCATTTCAGACTGGGAGAGACATTCAAGAGATTTGAGCATGTAACATATATGGATTTCTCTCGTTGTGAATCCATAATTGAAATACCTGACATGTCTCAATTTCAGAATTTAAAAAAATTAATGTTTAATGAGTGTAAGAATTTGATCAAGGTTCATGATTCTGTGGGATCTCTCTCTAAGCTGGTTGAATTAGACGTTAGTGGTTGTCCCAAACTTAGAAGCTTTCCACGTGAAATCAATATGGCATCGCTT	2094	0.3926	MALQLAAPSSGLTSETKYRYDVFLSFRGEDTRHSFTVILYNALRRKGVNAFIDDKKLGKGKRISPALLKAIEKSRISIIVFSRNYATSSWCLDELDHIIQCKKKKNQLVMPIFYKVNPMDVQYQTNSFGEAMAAHENRFRNDLEKVRKWRSALSEAASLSSAWLFEDGNESGFIERIVEDAYTVLPPKRLHSTGHIVGLESCIEEVISLLDQSDDGVCMLGIYGTGGVGKTTLAKALYNLIFHQYEGACFLFDVTDASKQYRGMVHLQQTLLSEILEERIKLGSVDEGISKMKHRLSHKRVLLVLDDVDELEHLEKLAGSSDWFGSGSKVIITTRNKQLLIAHRVETAYEMKKLNDHDALELFCWHAFHTSKPPKCYQDMSSRLIGYAQGLPLALRVIGSNLAQKNLEEWRITLEQYERIPEKTVHEVLKISYDCLQDTAKSIFLDIACFFKNSMEYIEEIQEAYNYGARFFIEVLVDKSLITVSNNGRFWMHDLIQKMGREIVRQEAPSNLGKRSRLWYYGDVLRVLHENLGSGNIEGIMLDPPQQEEVEWNGTAFKNMSNLRILIVRNAKFSMGAKYFPSSLRLLDWDGYPSMTLPPDFYPKNLVCFKLCGSHFRLGETFKRFEHVTYMDFSRCESIIEIPDMSQFQNLKKLMFNECKNLIKVHDSVGSLSKLVELDVSGCPKLRSFPREINMASL	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5041g00016	698	FunFam	Disease resistance protein (TIR-NBS-LRR class)	16	186	-	-
	Pral5041g00016	698	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	20	695	IPR044974	GO:0006952
	Pral5041g00016	698	Pfam	TIR domain	20	181	IPR000157	GO:0007165
	Pral5041g00016	698	SUPERFAMILY	"Winged helix" DNA-binding domain	424	528	IPR036390	-
	Pral5041g00016	698	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	189	447	IPR027417	-
	Pral5041g00016	698	Pfam	NB-ARC domain	200	432	IPR002182	GO:0043531
	Pral5041g00016	698	PRINTS	Disease resistance protein signature	670	686	-	-
	Pral5041g00016	698	PRINTS	Disease resistance protein signature	295	309	-	-
	Pral5041g00016	698	PRINTS	Disease resistance protein signature	388	402	-	-
	Pral5041g00016	698	PRINTS	Disease resistance protein signature	219	234	-	-
	Pral5041g00016	698	SUPERFAMILY	L domain-like	505	696	-	-
	Pral5041g00016	698	Gene3D	-	14	187	IPR035897	-
	Pral5041g00016	698	Gene3D	Ribonuclease Inhibitor	541	697	IPR032675	-
	Pral5041g00016	698	ProSiteProfiles	TIR domain profile.	18	185	IPR000157	GO:0007165
	Pral5041g00016	698	SMART	till_3	19	159	IPR000157	GO:0007165
	Pral5041g00016	698	Gene3D	-	188	348	IPR027417	-
	Pral5041g00016	698	Gene3D	-	353	437	IPR042197	-
	Pral5041g00016	698	Coils	Coil	400	420	-	-
	Pral5041g00016	698	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	159	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5041g00016	Pral-Chr5041	92034	95473	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5041g00016	20	698	WRKY Transcription Factor Family	AT4G12020	29.900	1.33e-81	281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5041g00016	-		-	pcin:129285870	1009.21