LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5041g00014	ATGGCTATTCAAGTTTCATACCATAGCTTCACTGGCAAACCCAAATACAGATTTGACGTTTTCCTAAGTTTCAGGGGTGAAGATACTCGCCACCTCTTCACTGTGCCTCTCTACAATGCTTTGCGACGCAAGGGAATCAATGCCTTCATTGACGACAAGAAGCTTGGCAAAGGGGAACGGATCGCACCTGCGCTTCTTAAAGCCATTGAGAGATCAAGGATCTCCATTATTGTGTTCTCTAAGAACTACGCTACTTCTACATGGTGCTTGGATGAACTTGCTCACATCATTTGGTGTAAGAAGGAGAAGAACCAGGTGGTTATGCCCATCTTTTACAAGGTGGCTCCCATGGCTGTTCAGTATCAGAGAGACAGTTTTGCAGCAGCCATGGCTGCTCATGAAGATAGGTTTAGAGATGACATGGATAAAGTGCAGAAATGGAGATCTGCTTTGTCTGAAGCTGCTTCTGTGTCAAAGGCCTGGCTTTTTGAAGATGGGTACGAAATTGGGTTTATGGAAAAGATTGTTAATGATGCTTATGCTATGCTGCCTCCTAAAAAATTATATAACATTGGGTACATGGTTGGACTTGAGCCTCGGGTGGAAGAAGTGACTTCACTTTTAAATCAATCCGATGATAGAGTTTGTATGCTGGGGATTCATGGAATTGGTGGAATTGGCAAGACAACCGTTGCAAAATTGGTCTATAATTCAATCTTCTACCAATTTGACGGTGCTTGTTTTTTGTTTGATGTTGAAGAAGCATCAAGGAAATATCTAGGCATGGTTCGTCTCCAACAAAAACTTCTATCAGAGATTCTTGAAGAGAAGACTATGAGGATTGGGAGTGTTGGTGAAGGAATATCAAGAATAAAACATAGACTTTCTCACAAAAAGGTTCTTTTGGTTCTTGATGCTGTTGATGAGATTGAACAGTTAGAACAACTTGCAGGCGGGTGTGATTGGTTTGGTTTTGGAAGCAAAGTCATTATAACAACAAGAAATAAGCAATTGCTAATTGCTCACAATGTTCAAAGAACATATGAAATGATGCAGCTGAATGAGTATGACTCTCGTGAGCTCTTTTGTTGGCATGCCTTCCATATGAACCAACCTCCAATAACATATCAAGATATGTCTAGTCGTGCAATAAGTTATGCACAAGGCCTTCCTTTGGCATTAAAAGTAATAGGCTCCAATTTGGCAAATAAAAATTTGGTGGAATGGATTTCTATACTGGAACAATATGAGAGGATCCCAGAAAGAACAATTCAAGATATTCTAAAGATAAGCTATGATTGCTTACAAACTGGTGCCAAGCGTATTTTCCTAGATATTGCTTGTTTTATTGGCAAGAAGGAACATATTAAAGAAGCAGTAAAAGCCTGCGATTTTGGTGCTAGGTTTTTTCTTGAAGTTCTTAACGATAAATCTTTGATAACTTTAGTTGCTGGTGATGAATATTTTTTCATGCATGATCTAATACGACAAATGGGAAGAGAGATTGTTAGACAAGAGGCACCATTAAATCCTGAAAAGCGCAGCAGATTATGGTATTATGAAGATGTTCTTAAAGTACTGCGTGAAAATTTAGGATGCAATAATATTGAAGGTATAATGCTTGATCCTCCTCGGCAAGAAAAAGTAAACTGGAGTGGTACGGCTTTTGAGAAGATGAATAATCTTAGAATTCTTGTTGTTCAAAATGTCAAATTTTCAACTGGTCCTACCTATCTTCCCAACAGTTTAAGATGGTTGGAATGGGAGCGATATCCTTCTGCAACTTTTCCAAAAGATTTTTCTCCTTCAGAGCTAATTTTCTTGAATCTACCTACAAGTTCTTTTAGACTAGAAGAGCCATTGAAGGTTTTTACTAGCTGTGTGACGCATTTGGATTTTTCATTTTGTCAATTCATAACTGAAGTACCTGATCTATCTCAATGTCAATGTCTACGAAGATTGGATCTGTCAAGCTGTTTCAATCTGATAAAAATTCATGATTCGTTGGGATCCCTCTCTAAGCTAATCGAATTAGATGTTAGTGAATGCACCAAACTTTCCATTTTTCCACATGAAATCAAGATGGCATCACTTGAATGGCTTGATCTTAAAGCCTGCACAAGTCTTGAGTACTTCCCACGTGTAGTGGGAAAGATGGATGCACTAAGGCGAATTTCCATAACTCGCACTGCTATTAAGGAGCTCCCACCTTCGATTGGAAATCTTTTGGGGCTTCGATATTTACATATGCACTCTTGCAGAAGTCTTGGGGAACTTCCAACCAGCTTATTCAAGATGCGAAATCTTCAGATGCTTGATTTCGGAGGCGTTCATCCTCATAATAGAAAATCTTGGATGAAGTTAATGCAAGATATCCAAATCAGCAGCTGTTATGTGAAGAAACTGCATCTCGTGAATTGTGGTCTGTTGGATGAAGAACTTCACCTAATTCTGAATTGTTTTCGAAATTTGCAAGGGTTATATATGCAAAGGAATGATTTTGTGTCTCTCCCTAAGTGCATTAAGCAGTGTAAGAGTCTATGGTGGCTGGATGTGAGAGACTGCAAGAGGCTAAGAGACATACCAGAGTTGCCATCAGAGTTGCATGACATAGATGCAGGGAATTGCACATCATTAACCGCCGGATCATTGGACAACTTATATTCTCAGGCAAAAATGGAGTTGCTTCACTTGAGAATCAGTGTGCCAGTAACAACATTTCCTGATTGGTTCAACTATTATGGTGAAGGAGACACGTTGTCTTTTCGCGTTCGTGGGAATTTATTACCTCGTGGTATTGTTGCATTTGAGGCCACGGGGAAAGCGAACATGAGTTTTGAACAGAGCTTCCCAGTTTTATGA	2862	0.3941	MAIQVSYHSFTGKPKYRFDVFLSFRGEDTRHLFTVPLYNALRRKGINAFIDDKKLGKGERIAPALLKAIERSRISIIVFSKNYATSTWCLDELAHIIWCKKEKNQVVMPIFYKVAPMAVQYQRDSFAAAMAAHEDRFRDDMDKVQKWRSALSEAASVSKAWLFEDGYEIGFMEKIVNDAYAMLPPKKLYNIGYMVGLEPRVEEVTSLLNQSDDRVCMLGIHGIGGIGKTTVAKLVYNSIFYQFDGACFLFDVEEASRKYLGMVRLQQKLLSEILEEKTMRIGSVGEGISRIKHRLSHKKVLLVLDAVDEIEQLEQLAGGCDWFGFGSKVIITTRNKQLLIAHNVQRTYEMMQLNEYDSRELFCWHAFHMNQPPITYQDMSSRAISYAQGLPLALKVIGSNLANKNLVEWISILEQYERIPERTIQDILKISYDCLQTGAKRIFLDIACFIGKKEHIKEAVKACDFGARFFLEVLNDKSLITLVAGDEYFFMHDLIRQMGREIVRQEAPLNPEKRSRLWYYEDVLKVLRENLGCNNIEGIMLDPPRQEKVNWSGTAFEKMNNLRILVVQNVKFSTGPTYLPNSLRWLEWERYPSATFPKDFSPSELIFLNLPTSSFRLEEPLKVFTSCVTHLDFSFCQFITEVPDLSQCQCLRRLDLSSCFNLIKIHDSLGSLSKLIELDVSECTKLSIFPHEIKMASLEWLDLKACTSLEYFPRVVGKMDALRRISITRTAIKELPPSIGNLLGLRYLHMHSCRSLGELPTSLFKMRNLQMLDFGGVHPHNRKSWMKLMQDIQISSCYVKKLHLVNCGLLDEELHLILNCFRNLQGLYMQRNDFVSLPKCIKQCKSLWWLDVRDCKRLRDIPELPSELHDIDAGNCTSLTAGSLDNLYSQAKMELLHLRISVPVTTFPDWFNYYGEGDTLSFRVRGNLLPRGIVAFEATGKANMSFEQSFPVL	953

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5041g00014	953	SUPERFAMILY	L domain-like	539	893	-	-
	Pral5041g00014	953	SUPERFAMILY	Toll/Interleukin receptor TIR domain	12	157	IPR035897	-
	Pral5041g00014	953	Gene3D	-	188	349	IPR027417	-
	Pral5041g00014	953	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	793	IPR044974	GO:0006952
	Pral5041g00014	953	Pfam	TIR domain	18	161	IPR000157	GO:0007165
	Pral5041g00014	953	SUPERFAMILY	"Winged helix" DNA-binding domain	423	527	IPR036390	-
	Pral5041g00014	953	Gene3D	Ribonuclease Inhibitor	524	719	IPR032675	-
	Pral5041g00014	953	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	189	446	IPR027417	-
	Pral5041g00014	953	Pfam	NB-ARC domain	200	431	IPR002182	GO:0043531
	Pral5041g00014	953	Gene3D	-	352	436	IPR042197	-
	Pral5041g00014	953	Gene3D	-	12	187	IPR035897	-
	Pral5041g00014	953	SMART	till_3	17	157	IPR000157	GO:0007165
	Pral5041g00014	953	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	184	-	-
	Pral5041g00014	953	PRINTS	Disease resistance protein signature	387	401	-	-
	Pral5041g00014	953	PRINTS	Disease resistance protein signature	670	686	-	-
	Pral5041g00014	953	PRINTS	Disease resistance protein signature	217	232	-	-
	Pral5041g00014	953	PRINTS	Disease resistance protein signature	294	308	-	-
	Pral5041g00014	953	Gene3D	Ribonuclease Inhibitor	720	912	IPR032675	-
	Pral5041g00014	953	ProSiteProfiles	TIR domain profile.	16	183	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5041g00014	Pral-Chr5041	65047	69375	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5041g00014	12	802	WRKY Transcription Factor Family	AT4G12020	29.805	1.68e-86	303

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5041g00014	-		-	pcin:129286217	1179.85