LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5041g00005	ATGTTGGCTCTTCCACCTACAAGTGTACTTTTTGGGAATGGGTTGAGATACAATTTTGACCCTGATCGTAGAGGCACGGCGATTCGAATGGCAGCACCATCATCGGCTGTCTTCGCCGGCAAATCCAAGTACAGATATGACGTTTTCCTCAGTTTCAGAGGCGAAGATACTCGCCACTCCTTCACTGTTCATCTCTACGATGCTCTGCGCCGGAAGGGAATCAACGCCTTCATTGACGACAAGAAGCTTGGGAAAGGGGAGCGTATCTCACCTACGCTTCTTAAGGCCATTGAGAAATCCAGAATCTCGATTATTGTGTTCTCTAGGAATTATGCAACTTCCACATGGTGCCTCGATGAACTCGCTCACATCATTCGGTGTAAGAAGGAGAAGAACCAACTGGTCATGCCCGTATTTTACAATGTGGATCCGATGGATGTTCAATATCAGAGGAACAGCTTTGGAGATGCCATGGCTGCTCTGGAAGATAGATTCAGAGATGACTTGAAGAAAGTGCGAAAATGGAGATCTGCTTTGTCTGAAGCTGCTAGTTTGCCATCAGCATGGCTTTTGGGAGATGGAGATGGATGTGGGTTTATTGAAAAGATTGTTGAAGATGCATATGCTATGTTACCTCCTAAACGCTTGCATTGCCGTGAGTACATGGTTGGACTTGGGCCTCGCATAGAAATGATGAAGTCACTTTTGGATCATTCTAATGATGGCATTTGTATGTTGGGGATTTATGGAACTGGTGGAGTTGGAAAAACAACCCTTGCAAAGGCTTTGTATAATTCAATCTTCTACCAATTTGAAGGCGCGTGTTTTTTGTTTGATGTTAGAGAAGTGTCAAAGAAATACCAGGGCATTGTTCATCTTCAGCAAACATTATTATCAGAGATTCTTGGGGAAAAGAAGACAAAGTTTGGCAGTGCTGATGAAGGAATATCTAGAATAAAACACAGGCTCTCTCACAAAAGAATCCTATTGGTTCTTGATGATGTTGATGAGGTTGAACAGTTAGAAAAACTAGCAGGTGGGCGTCATTGGTTTGGTTGTGGAAGCAAGGTCATTATAACAACAAGAAATAAACAGTTGCTAGTTGTGTGTAATGTTGAGAAAACATATGAAATGAAGAGGCTAGATGATCATGACTCTCTTGAACTCTTTTGCTGGCATGCATTCCGTTTGAGCCAGCCTCCAAAAGGCTATGAAAAAATGTCCAAACGTGTGATGAGATTTGCAAAGGGCCTTCCTTTGGCTTTAAGAGTAATTGGCGCCAATTTGGCACATAAAAATTTAGAGGAATGCAGGTCTATATTAGAACAATATGAGAGGATCCCAGAAAGAACAATTCTAGATGTACTCAAGATAAGCTATGATTGCTTACAAGATGGTGCCAAGGGTATTTTTCTAGATATTGCTTGTTTCTTTAAAGAGGAGGATTTGGAATCTGTTGAAGAAAAACTAGCAGCTTGCGATTTTGGTGCAAGGTTTTACATTGAAGTTCTTGTTGACAAGTCTCTTATAACTGTTGCTGATAACGGTAACTTGGGCATGCATGATTTAGTACAACAAATGGGTAGAGAGATTGTTAGGCAGGAGGCACCATCAAATCCCTGTAAACGCAGTAGATTATGGCATTACAAAGATGTTCTTAAAGTATTGCGTGAAAATCTAGGGAGCAGTAATATTGAAGGAATAATGCTTGATCCGCCTCAACAAGAAGAAGTGGAGTGGAGTGGTATGGCCTTTGAGAAGATGAGTAATCTCAGGATTCTTGTGGTTCGGAATTCACAATTTTCAACCAACCCAAAGTATCTTCCAAGTAGTTTAAGATTGCTTGACTGGGCGGGATACCCTTCTACTATTCTACCACCAGACTTTTCTCCTAAGAAACTAGTTTACATCAAATTATCTGGTAGTCTTTTTAGATTGGAAGAGCCATTCAAGAGGTTTGAATGTGTGACATATATGAATTTCTCACACTGTAAATTCATAACTGAAGTACCTGATATGTCTCAATTTCAAAATTTAAGAAGATTGTTATTTACAAGGTGTCGCAATCTCATCAAAGTTCACGATTCAGTTGGATCCTTGTCTAAGCTCGTCGAATTAAACCTTAGTGTGTGCAGCAGTCTTACAAGCTTTCCACGTGAAATCAATATGGCTTCTCTTCAGAAGCTTCATCTCAGTTATTGCAGGAGTCTTGACTACTTCCCATGTATAGTGGGAAAGATGGATGCACTGAGGACAATTTATGCAGAAGGCACTGCTATTAAAGAGCTCCCACCTTCCATTGGAAATCTTCCAAGACTCGGATCTTTAGCTATAAGCACCCACAAAAGTATTAGGGAGCTTCCAAGCTGCTTATTCACATTGCAAAACCTTAGTCGGCTTAATCTAAGTGGTATTCAACCTCCAAGCATAAAATCTTTAATGAAATTAATGCAAGAGAGCCAACCTGTTATCAGCTGTTCAAACTTGGAGGCATTAAATCTTGAAAATTGTTGTCTTACTCATGAAGATCTTCACCTAGCTTTACGTTGTTTTTGGAATGTTCAAAAGTTAATTCTTTCAGGGAGCAATTTTGTTTCCCTTCCTGAGTGCATCAAAGAGTGTGCGAATCTGCAGACACTAGTGCTGAATAACTGCAAGAGGCTTAGAGACATACCTGAGTTGCCATCAAAATTGGAAAATATAGAGGCAGAGGATTGTACATCATTAACTACAGAGTCATTAGGCCATCTATGGTCTCAGGTTTTGTCATCCCTTTTGTATACTCGTTTTCTGTTGCTATTTTGA	2805	0.4036	MLALPPTSVLFGNGLRYNFDPDRRGTAIRMAAPSSAVFAGKSKYRYDVFLSFRGEDTRHSFTVHLYDALRRKGINAFIDDKKLGKGERISPTLLKAIEKSRISIIVFSRNYATSTWCLDELAHIIRCKKEKNQLVMPVFYNVDPMDVQYQRNSFGDAMAALEDRFRDDLKKVRKWRSALSEAASLPSAWLLGDGDGCGFIEKIVEDAYAMLPPKRLHCREYMVGLGPRIEMMKSLLDHSNDGICMLGIYGTGGVGKTTLAKALYNSIFYQFEGACFLFDVREVSKKYQGIVHLQQTLLSEILGEKKTKFGSADEGISRIKHRLSHKRILLVLDDVDEVEQLEKLAGGRHWFGCGSKVIITTRNKQLLVVCNVEKTYEMKRLDDHDSLELFCWHAFRLSQPPKGYEKMSKRVMRFAKGLPLALRVIGANLAHKNLEECRSILEQYERIPERTILDVLKISYDCLQDGAKGIFLDIACFFKEEDLESVEEKLAACDFGARFYIEVLVDKSLITVADNGNLGMHDLVQQMGREIVRQEAPSNPCKRSRLWHYKDVLKVLRENLGSSNIEGIMLDPPQQEEVEWSGMAFEKMSNLRILVVRNSQFSTNPKYLPSSLRLLDWAGYPSTILPPDFSPKKLVYIKLSGSLFRLEEPFKRFECVTYMNFSHCKFITEVPDMSQFQNLRRLLFTRCRNLIKVHDSVGSLSKLVELNLSVCSSLTSFPREINMASLQKLHLSYCRSLDYFPCIVGKMDALRTIYAEGTAIKELPPSIGNLPRLGSLAISTHKSIRELPSCLFTLQNLSRLNLSGIQPPSIKSLMKLMQESQPVISCSNLEALNLENCCLTHEDLHLALRCFWNVQKLILSGSNFVSLPECIKECANLQTLVLNNCKRLRDIPELPSKLENIEAEDCTSLTTESLGHLWSQVLSSLLYTRFLLLF	934

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5041g00005	934	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	217	474	IPR027417	-
	Pral5041g00005	934	Gene3D	-	40	218	IPR035897	-
	Pral5041g00005	934	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	46	905	IPR044974	GO:0006952
	Pral5041g00005	934	FunFam	Disease resistance protein (TIR-NBS-LRR class)	42	212	-	-
	Pral5041g00005	934	Pfam	NB-ARC domain	232	440	IPR002182	GO:0043531
	Pral5041g00005	934	Pfam	TIR domain	46	190	IPR000157	GO:0007165
	Pral5041g00005	934	Gene3D	-	219	376	IPR027417	-
	Pral5041g00005	934	ProSiteProfiles	TIR domain profile.	44	211	IPR000157	GO:0007165
	Pral5041g00005	934	Gene3D	-	380	464	IPR042197	-
	Pral5041g00005	934	SUPERFAMILY	"Winged helix" DNA-binding domain	451	556	IPR036390	-
	Pral5041g00005	934	SUPERFAMILY	L domain-like	570	915	-	-
	Pral5041g00005	934	SMART	till_3	45	185	IPR000157	GO:0007165
	Pral5041g00005	934	Gene3D	Ribonuclease Inhibitor	553	738	IPR032675	-
	Pral5041g00005	934	Gene3D	Ribonuclease Inhibitor	739	927	IPR032675	-
	Pral5041g00005	934	PRINTS	Disease resistance protein signature	245	260	-	-
	Pral5041g00005	934	PRINTS	Disease resistance protein signature	698	714	-	-
	Pral5041g00005	934	PRINTS	Disease resistance protein signature	415	429	-	-
	Pral5041g00005	934	PRINTS	Disease resistance protein signature	322	336	-	-
	Pral5041g00005	934	SUPERFAMILY	Toll/Interleukin receptor TIR domain	42	185	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5041g00005	Pral-Chr5041	33415	38579	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5041g00005	42	804	WRKY Transcription Factor Family	AT4G12020	32.015	4.47e-98	337

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5041g00005	-		-	pcin:129286217	1268.83