Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5040g00003 ATGGCGATTCAAGTGGTTTCACCATCATCCCATAGCTTCACCAGCGAAGCTAAGTATCGATATGATGTTTTCCTGAGTTTTAGAGGTGAAGATACTCGCCACATCTTCACTGCACCTCTCCACGATGCTTTGCACCGTAAGGGAATCAACGCCTTCATTGATGACAAGAAGCTTGGGAAAGGGGAAAAGATCTCACCTACGCTTCTTAAGGCCATTGAGAGATCCAGGATTTCCATTATTGTGTTCTCTAAGAACTATGCTACTTCCACTTGGTGCCTGGAGGAACTTGCTCACATCGTTTGGTGTAAGAAGGAAAAGAAACAGCTGGTTATGCCCATCTTTTACAAGGTAGATCCGATGGATGTTCAGTATCAGAGAAACAGCTTTGAGGAAGCCATGGCTGTTCTTGAAGAAAGATTCAGAGATGACACGGAGAAAGTTAGAAAATGGAGATCTGCTTTGTTTGAAGCTGCTAGCTTGTCATCAGCATGGCTTTTCAAAGATGGATACCAAGATGGATTTATTGAAAGTATCGTTGAAGATGCATATGCTAGGCTACCTCCTAAGCGCTACCATAACGTTGATTACATCGTCGGACTTGAGCCTTGTATAGAAAAAGTGATGTCACTTTTGGATGAAAGTGATGATAATAGAGTTTCTATGTTGGGAATTTATGGAATTGGTGGGATTGGCAAAACAACCCTTGCAAAAGCTGTCTATAATTCAATCTTCTTCAATTTTGAAGGTGCTTGTTTTTTGTTTGATGTTCGAGAAATATCAAAGAAATATCAAGGTGTTGTTAGCCTTCAACGAACACTACTATCAGAAATTCTAGATGAAAACAAGATTAAGTTTTGTAGTGTTGACGAAGGAATATCAAAAATAAAACATAGGCTCTCTCGGAAAAAGATTCTATTGGTTCTTGATGACGTTGAAGAAGTTGAACAGTTAGAACAACTTGCGGGAGGATGTGATTGGTTTGGTTGTGGAAGCAAGATCATTATAACAACAAGAAACAAGCAATTACTAATTGCACGCAATATCACAAAGACATATGAAATGAAGGAGTTAAATGAGAGTTACTCTCTTGAGCTTTTTTGTTGGCATGCATTTCGAAAGAGCCAACCTCCAAAAGTATACAAAAGTATGTCCATTGGTATTACACGTTATGTACGTGGCCTTCCTTTGACTTTAAAGTTGATAGGCTCCAACTTGGCACACAAAGACTTAGAGGAATGGAGATATGCATTGAAACAATATTATCAAATCTCAAGAACAACAATATATGAGATATTGAAAGTAAGCTATGATTGCTTACAAGATGATGCTAAGCGTATTTTCTTGGACATTGCTTGTTTCTTTGCAAAGGAGACATTGGAATTGGTTGAAGACATACTAGGAGCTTGTTACTATGGGACAAGGTTTTATATTGAAGTTCTTGTTGATAAATCTTTGATAACTATTGCTGATAATGGTCTCTTGCTGATGCATGATCTAATACAACAAATGGGTAAAAAGATTGTTGAGCAAGAGGCACCCTCAAATCCTGGTAGACGTAGCAGGTTATGGTATTACAAAGATGTTCTTAATGTGCTGCGCAAAGATTTAGGAGAAAAAGATATCGAAGGAATAATACTTGATCCACCTGAACAAGAAGAAGTGAAGTGGAATGGTTTAGCCTTTGAGAAGATGGATAATCTTCGTATTCTCATTGTTCGAAATACCCAATTCTTAACAAGTCCCAGGTATCTTCCCAATAGTTTGATATTGCTTGATTGGGAGGGGTATCCTTCTATGACTTTACCACCGGATTTTTCTCCTCCAAAACTAGTTTGCTTCAAGCTGTGTAGAAGTCTTTTCAAATTGGAAGAGCCATTCCAGATGGTAGCGCTATTAAAGAGTTTCCAAATAGCTTATTCACGCTACAAAATCTTAGCGTACTTCTGCTGGGAGGCCTTCGATCTCATGGTAGAAATTCCTTGA 1983 0.3848 MAIQVVSPSSHSFTSEAKYRYDVFLSFRGEDTRHIFTAPLHDALHRKGINAFIDDKKLGKGEKISPTLLKAIERSRISIIVFSKNYATSTWCLEELAHIVWCKKEKKQLVMPIFYKVDPMDVQYQRNSFEEAMAVLEERFRDDTEKVRKWRSALFEAASLSSAWLFKDGYQDGFIESIVEDAYARLPPKRYHNVDYIVGLEPCIEKVMSLLDESDDNRVSMLGIYGIGGIGKTTLAKAVYNSIFFNFEGACFLFDVREISKKYQGVVSLQRTLLSEILDENKIKFCSVDEGISKIKHRLSRKKILLVLDDVEEVEQLEQLAGGCDWFGCGSKIIITTRNKQLLIARNITKTYEMKELNESYSLELFCWHAFRKSQPPKVYKSMSIGITRYVRGLPLTLKLIGSNLAHKDLEEWRYALKQYYQISRTTIYEILKVSYDCLQDDAKRIFLDIACFFAKETLELVEDILGACYYGTRFYIEVLVDKSLITIADNGLLLMHDLIQQMGKKIVEQEAPSNPGRRSRLWYYKDVLNVLRKDLGEKDIEGIILDPPEQEEVKWNGLAFEKMDNLRILIVRNTQFLTSPRYLPNSLILLDWEGYPSMTLPPDFSPPKLVCFKLCRSLFKLEEPFQMVALLKSFQIAYSRYKILAYFCWEAFDLMVEIP 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5040g00003 660 Gene3D - 15 188 IPR035897 -
Pral5040g00003 660 Pfam NB-ARC domain 203 424 IPR002182 GO:0043531
Pral5040g00003 660 PRINTS Disease resistance protein signature 391 405 - -
Pral5040g00003 660 PRINTS Disease resistance protein signature 562 578 - -
Pral5040g00003 660 PRINTS Disease resistance protein signature 221 236 - -
Pral5040g00003 660 PRINTS Disease resistance protein signature 298 312 - -
Pral5040g00003 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 450 IPR027417 -
Pral5040g00003 660 Gene3D - 356 440 IPR042197 -
Pral5040g00003 660 Gene3D - 189 351 IPR027417 -
Pral5040g00003 660 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 160 IPR035897 -
Pral5040g00003 660 Pfam TIR domain 21 166 IPR000157 GO:0007165
Pral5040g00003 660 SUPERFAMILY "Winged helix" DNA-binding domain 427 532 IPR036390 -
Pral5040g00003 660 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 628 IPR044974 GO:0006952
Pral5040g00003 660 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Pral5040g00003 660 SMART till_3 20 160 IPR000157 GO:0007165
Pral5040g00003 660 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5040g00003 Pral-Chr5040 12323 15652 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5040g00003 21 621 WRKY Transcription Factor Family AT4G12020 32.248 9.31e-70 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5040g00003 - - pcin:129284776 913.294