Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5039g00028 ATGTCACTTTTGGATGAAAGTGATGAAAATAGAGTTTGTATGTTGGGAATTTATGGAATTGGTGGGATTGGCAAAACAACCCTAGCAAAAGCTGTCTATAATTCAATCTTCTACAATTTTGAAGGTGCTTGTTTTTTGTTTGATGTTCGAGAAATATCAAAGAAATATCAAGGTGTTGTTAGCCTTCAACGAACACTACTATCAGAAATTCTAGATGAAAACAAGATTAAGTTTTGTAGTGTTGACGAAGGAATATCAAAAATAAAACATCGGCTCTCTCGCAAAAAGATTCTATTGGTTCTTGATGACGTTGAAGAAGTTGAACAGTTAGAACAACTTGCAGGAGGATGTGATTGGTTTGGTGGTGGAAGCAAGATCATTATAACAACAAGAAACAAGCAATTACTAATTGCATGCAATATTACAAAGACATATGAAATGAAGGAGTTAAATGAGCGTTACTCTCTTGAGCTTTTTTGTTGGCATGCATTTCGAAAGAGCCAACCTCCAAAAGTATACAAAAGTATGTCCATTGGTATTACACATTATGTACGTGGCCTTCCTTTGGCTTTAAAGTTGATAGGCTCCAATTTGGCACACAAAGACTTAGAGGAATGGAGATATACATTGACACAATATTATAAAATCTCAAGAACAACAATATATGAGATATTGAAAGTAAGCTATGATTGCTTACAAGATGATGCTAAGCGTGTTTTCTTGGACATTGCTTGTTTCTTTAAAACGGAGACATTGGAATTGGTTGAAGAAATACTAGGAGCTTGTTACTATGGGACAAGGTTTTATATTGAGGTTCTTGTTGATAAATCTTTGATAACTATTGCTGATAATGGTCTCTTGCTGATGCATGATCTAATACAACAAATGGGTAAAAAGATTGTTGAGCAAGAGGCACCCTCAAATCCTGGTAGACGTAGCAGGTTATGGTATTACAAAGATGTTCTTAATGTGCTGCGTAAAAATTTAGGAGAAAATGATATTGAAGGAATAATACTTGATCCACCTGAACAAGAAGAAGTGAAGTGGAATGGTTTAGCCTTTGAGAAAATGGATAATCTTCGCATTCTCATTGTTCGAAATACCCACTTTTTAACCGGTCCCAGGTATCGCCCCAACAGTTTGAGATTGCTTGATTGGGAGGGATATCCTTCTATGACTTTACCGCCGGATTTTTCTCCTCCAAAACTAGTTTGCTTCAAGTTATGTAGAAGTCTTTTCAGATTTGAAGCGCCATTCCAGAAGTTTGAATATGTGACACATATGAATTTCTCGCGGTGTGAATTTATAACAGAAGTACCTGATATGTCTCATTTTCAAAACTTAAAAACATTAAGCTTTCGCGAATGTCGCAATTTGATCAAAGTTCATGATTCAGTGGGATTTCTTTGCAAGCTAATCAAATTAGACGTTGGTAAATGTACCCAACTTAAAAGCTTTCCAAGTGAAATCAACATGCCATCTCTTGAGATGCTCGTTCTTACTGATTGCAAGAGTCTTGACTACTTCCCAAATATAGTTGGAAATACGGATGCACTTGGAAGTATTTTTGCAGATGGTAGCGCTATGAAAGAGCTTCCAAATAGCTTATTCACGCTACAAAATCTTAGCTTACTTATGCTGGGAGGCCTTCGATCTCATGGTAGAAAATCTTTGAAGAAACTACTGCAAGAGAGCCAACCATTTGTCAGTTGCACTAACCTAGAGTGCTTGGATCTCGGAAACTGCGGCCTATTGGATGAAGATGTTTACCATACTCTGAAATGTTTTCAGAATCTGCAAGACTTGGATCTATCAGGAAATCATTTTGCATCACTTGCTGAGTGCATTAAAGAGTGCGATGATCTAATGATGCTTGAAATAAATAATTGTAAGAGACTAAGAGACATACCAGAGTTGCCATCGGGGTTGCGCCACATAAAGGCAGAGAATTGCGCAGCATTAACAACCGAGTCAATAAGCCGTTTATGGTTTCAGGCAAAAACCTTCTTTACTATGCCAGCAACAACATTTCCTGATTGGTTCGACTACTGCTGTGAAGGAGACACATTGTCTCTTGGTGTTCGTGGGAAAAATTTCCCTGCTCTTGTCATTGCAATTGAATCGGGCAAAGCTAAGGCAAAAAGGAGTCGTCTCACCTTCCAAGCTTTTATCAGAATTAATGACCGTAAAATGTCATGGACAAATCACGATGTTCCTTATGCTCTTGGTCAAAGTAGAGAATGTGATGCGTTGGTTTTCTTTGGTAAGCAAGGTCAAGTGATTTCATTTGATTTACTCCAGAATTATTTTGATGAAGAAGAATTGGAGGAGCTTAGTAAGTTTCTAGAATTGGGTTGGAATTATGTGGATATACAAGTTATGTGTGACTCGCCAAATATCTCCATAATTAAGAGTGGAGTTTATGTTGATAAGCAGCAAACAAGCATGGAGAATATTCGTTTTGTGTCTCCCAGGGCTTTCATGAATAATGCTTCAAGAACTTCACTGAAACGAAAAGTCATAAGTTCCCCTCTTAATGAACCAGCGAAGAAGCTCTTGAGACATTTTAAGGCTACAGATAAAGGAAAACTCGATAACACCAAGAAAGGGACCAATGAGCCTCTATTTTCTTCTGCAACCACGGCCATTCGAATGGCAGCACCATCATCGGCTGTCTTCGCCGGCAAATCCAAGTACAGATATGACGTTTTCCTCAGTGTCAGAGGCGAAGATACTCGCCACTCCTTCACTGTTCATCTCTACGATGCTCTGCGTCGGAAGGGAATCAACGCCTTCATTGACGACAAGAAGCTTGGGAAAGGGGAGCGGATCTCACCTACGCTTCTTATGGCCATTGAGAAATCCAGAATCGCGATTATTGTGTTCTCTAGGAATTATGCAACTTTCACATGGTGCCTCAATGAACTCGCCCGCATCATTCGGTGTAAGAAGGAGAAGAACCAACTGGTTATGCCCGTATTTTACAATGTGAATCCGATGGATGTTCAATATCAGAGTAACAGCTTTGGAGATGCCATGGCTGCTCTGGAAGATAGGTTCACAGATGACTTAAAGAAAGTGCGAAAATGGAGATCTGCTTTGTCTGAAGCTGCTAGTTTGCCATCAGCATGGCTTTTGGGAGATGGGTGGGCTTCTTTATAG 3162 0.3909 MSLLDESDENRVCMLGIYGIGGIGKTTLAKAVYNSIFYNFEGACFLFDVREISKKYQGVVSLQRTLLSEILDENKIKFCSVDEGISKIKHRLSRKKILLVLDDVEEVEQLEQLAGGCDWFGGGSKIIITTRNKQLLIACNITKTYEMKELNERYSLELFCWHAFRKSQPPKVYKSMSIGITHYVRGLPLALKLIGSNLAHKDLEEWRYTLTQYYKISRTTIYEILKVSYDCLQDDAKRVFLDIACFFKTETLELVEEILGACYYGTRFYIEVLVDKSLITIADNGLLLMHDLIQQMGKKIVEQEAPSNPGRRSRLWYYKDVLNVLRKNLGENDIEGIILDPPEQEEVKWNGLAFEKMDNLRILIVRNTHFLTGPRYRPNSLRLLDWEGYPSMTLPPDFSPPKLVCFKLCRSLFRFEAPFQKFEYVTHMNFSRCEFITEVPDMSHFQNLKTLSFRECRNLIKVHDSVGFLCKLIKLDVGKCTQLKSFPSEINMPSLEMLVLTDCKSLDYFPNIVGNTDALGSIFADGSAMKELPNSLFTLQNLSLLMLGGLRSHGRKSLKKLLQESQPFVSCTNLECLDLGNCGLLDEDVYHTLKCFQNLQDLDLSGNHFASLAECIKECDDLMMLEINNCKRLRDIPELPSGLRHIKAENCAALTTESISRLWFQAKTFFTMPATTFPDWFDYCCEGDTLSLGVRGKNFPALVIAIESGKAKAKRSRLTFQAFIRINDRKMSWTNHDVPYALGQSRECDALVFFGKQGQVISFDLLQNYFDEEELEELSKFLELGWNYVDIQVMCDSPNISIIKSGVYVDKQQTSMENIRFVSPRAFMNNASRTSLKRKVISSPLNEPAKKLLRHFKATDKGKLDNTKKGTNEPLFSSATTAIRMAAPSSAVFAGKSKYRYDVFLSVRGEDTRHSFTVHLYDALRRKGINAFIDDKKLGKGERISPTLLMAIEKSRIAIIVFSRNYATFTWCLNELARIIRCKKEKNQLVMPVFYNVNPMDVQYQSNSFGDAMAALEDRFTDDLKKVRKWRSALSEAASLPSAWLLGDGWASL 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5039g00028 1053 FunFam Disease resistance protein (TIR-NBS-LRR class) 897 1046 - -
Pral5039g00028 1053 Pfam NB-ARC domain 4 214 IPR002182 GO:0043531
Pral5039g00028 1053 Gene3D - 895 1049 IPR035897 -
Pral5039g00028 1053 SUPERFAMILY "Winged helix" DNA-binding domain 220 325 IPR036390 -
Pral5039g00028 1053 Gene3D Ribonuclease Inhibitor 328 521 IPR032675 -
Pral5039g00028 1053 Gene3D Ribonuclease Inhibitor 522 664 IPR032675 -
Pral5039g00028 1053 ProSiteProfiles TIR domain profile. 899 1053 IPR000157 GO:0007165
Pral5039g00028 1053 SUPERFAMILY L domain-like 302 660 - -
Pral5039g00028 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 243 IPR027417 -
Pral5039g00028 1053 SMART till_3 900 1040 IPR000157 GO:0007165
Pral5039g00028 1053 ProSiteProfiles Leucine-rich repeat profile. 598 619 IPR001611 GO:0005515
Pral5039g00028 1053 Gene3D - 149 233 IPR042197 -
Pral5039g00028 1053 Pfam TIR domain 901 1045 IPR000157 GO:0007165
Pral5039g00028 1053 Gene3D - 1 144 IPR027417 -
Pral5039g00028 1053 PRINTS Disease resistance protein signature 14 29 - -
Pral5039g00028 1053 PRINTS Disease resistance protein signature 184 198 - -
Pral5039g00028 1053 PRINTS Disease resistance protein signature 490 506 - -
Pral5039g00028 1053 PRINTS Disease resistance protein signature 91 105 - -
Pral5039g00028 1053 SUPERFAMILY Toll/Interleukin receptor TIR domain 897 1040 IPR035897 -
Pral5039g00028 1053 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 512 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5039g00028 Pral-Chr5039 245579 251594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5039g00028 15 616 WRKY Transcription Factor Family AT4G12020 32.212 1.32e-71 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5039g00028 - - pcin:129284776 1108.59