Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5039g00026 ATGGCGATTCAAGTGGCTTCACCATCATCCCTTAGCTTCACCAGCAAAACTAAGTATAGATATGATGTTTTCCTGAGTTTCAGAGGTGAAGATACTCGCCACGCCTTCACTGTGCCTCTTTACAATTCTCTACGACGTAAGGGGATCAACGCCTTCATTGATGACAAGAAGCTTGGGAAAGGGGAACGAATCGCACCTGCACTTATCAAAGCCATTGAGAGATCAAGGATTTCCATTATTGTCTTCTCTACAAACTATGCTACTTCCACATGGTGCCTAGAGGAACTCGCCCACATCATCTGGTGCAAGAAACAGAAGAATCAATTGCTTATGCCCATATTTTACAAAGTGGATTTGTTGGATGTTCAATATCAGAGAAATAGCTTTGAAGAAGCCATGGCTGCTCTTGAAGATAGGTATAGAGATGACTTAGAGAAAGTGTGCGAATGGCGTTCTGCTTTGTTCGAAGCTGCTAGTTTATCATCAGCATGGCTTTTCAAGGACGGATGTGAATATGGATTTATTGAAAGGATCGTGGAACATGCATATTCTATGCTGCCACCTAAACGCTTCCATAACGTTGATTACATCGTTGGACTTGAGCCTCGGATAGAAGAAGTGATCTCACTTATAAATAAATCTGACAAAGGCGTCTGCATGTTGGGAATTCATGGAACTGGCGGAATTGGCAAAGCAACCCTTGCAAAAGCTCTCTATTATTCAATCTTCTATCATTTTGAAGGTGCTTGTTTTTTGTTTGATGTCAGAGAAGTATCAAAGAAGTATCAGGGCGTTGTTCGCCTTCAACAAACACTTCTATCAGAAATTCTTGAGGAAAAGAAGATGAAGTTTTGCAGTGTTGACGAAGGGAAATCTATAATTAAACATAGACTCTCTAACAAAAAGGTGTTATTGGTTCTTGACGATGTTGATGAGTTTGAACAGTTAGAACGACTTGCAGGCGGCTGTGAGTGGTTTGGTTGTGGAAGCAAAATCATTATAACAACAAGAAATAAGCAATTGCTAATTGCACGAAATGTTGAGAAAGCATATGAAATGAAGGAGCTAAATCATCTTTACTCTCTTGAACTCTTTTGTTGGCATGCCTTTCGCATGATACAACCTGCAAGTGACTATACACATATGTGCAATCATGTTGTAAGATATGTACATGGCCTTCCTCTAGCCTTGAAATTAGTAGGTTCCAATTTGGCACATAAAACCTTAGAGGAATGGAGATCTATGTTGGAGAAGTATAAAAGAATCCCTGAAAGAACTATCCATGAGGTTCTCAAGATAAGCTATGATTGCTTACAAGATGGTGCTAAGCGTGTTTTCCTAGACATTGCTTGTTTCTTTAAAAGGAAGACATTAGAATCCATTGAAGACGTACTAGAAGCCTGTGATGATGGGGCAAGAGATTGTTAG 1428 0.3985 MAIQVASPSSLSFTSKTKYRYDVFLSFRGEDTRHAFTVPLYNSLRRKGINAFIDDKKLGKGERIAPALIKAIERSRISIIVFSTNYATSTWCLEELAHIIWCKKQKNQLLMPIFYKVDLLDVQYQRNSFEEAMAALEDRYRDDLEKVCEWRSALFEAASLSSAWLFKDGCEYGFIERIVEHAYSMLPPKRFHNVDYIVGLEPRIEEVISLINKSDKGVCMLGIHGTGGIGKATLAKALYYSIFYHFEGACFLFDVREVSKKYQGVVRLQQTLLSEILEEKKMKFCSVDEGKSIIKHRLSNKKVLLVLDDVDEFEQLERLAGGCEWFGCGSKIIITTRNKQLLIARNVEKAYEMKELNHLYSLELFCWHAFRMIQPASDYTHMCNHVVRYVHGLPLALKLVGSNLAHKTLEEWRSMLEKYKRIPERTIHEVLKISYDCLQDGAKRVFLDIACFFKRKTLESIEDVLEACDDGARDC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5039g00026 475 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 460 IPR044974 GO:0006952
Pral5039g00026 475 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 160 IPR035897 -
Pral5039g00026 475 Gene3D - 15 188 IPR035897 -
Pral5039g00026 475 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Pral5039g00026 475 Pfam NB-ARC domain 204 422 IPR002182 GO:0043531
Pral5039g00026 475 Gene3D - 356 439 IPR042197 -
Pral5039g00026 475 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Pral5039g00026 475 Gene3D - 189 350 IPR027417 -
Pral5039g00026 475 Coils Coil 126 146 - -
Pral5039g00026 475 PRINTS Disease resistance protein signature 220 235 - -
Pral5039g00026 475 PRINTS Disease resistance protein signature 297 311 - -
Pral5039g00026 475 PRINTS Disease resistance protein signature 390 404 - -
Pral5039g00026 475 Pfam TIR domain 21 181 IPR000157 GO:0007165
Pral5039g00026 475 SMART till_3 20 160 IPR000157 GO:0007165
Pral5039g00026 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5039g00026 Pral-Chr5039 233666 235681 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5039g00026 21 468 WRKY Transcription Factor Family AT4G12020 27.556 3.18e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5039g00026 - - pcin:129286213 741.88