Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5039g00016 ATGGCGATTCAACCGGCAGCATCATCATCCCATACCTTTACCAAGTACAGATACGACGTTTTCTTGAGTTTCAGAGGCGAAGACACTCGCCACTCTTTCACTGTCATTCTCTACGATGCCTTGCTTAGGAAGGGAATCAACGCCTTCATTGATGACAGAAAGCTTGGGAAAGGGGAAGAGATCTCGCCTACGCTTCTTAAAGCCATTGAGAGATCAAGGATTTCCATTATTGTGCTCTCTAGAAACTATGCTACTTCCACTTGTTGCCTAGAGGAACTCGCCCACATCATTTGGTGTAAGAAGCAGAAGAATCAGGTGGTCATGCCCATCTTTTACAAGGTCGATCCGTTGGATGTTCAGTATCAGAGAAATAACTTTGAGGAAGCCATGGCCACCCTTGAAGATAGGTTCAGAGATGATTTAGAGAAAGTGTGGAAATGGAGATACGAAATTGGGTTTATTGAAAGGATTGTTGAATATGTGTATGCTATGCTTCCGCCTAAACCATACCATAACATAGAACACATGGTTGGACTTCAGCCTCGGGTAGAAAAAGTGATCTCGCTTCTAAATAAATCTGACAAAGGTGATTGCATGTTGGGCATTCATGGAATTGGCGGAATTGGCAAAACAACCCTTGCAAAAGCTATCTATAATTCGATCCTCTACAAATTTGAAGGTGCGTGTTTCTTGTTTGATGTCAATGAGGCATCAAAAAAATTCCAGGGCATTGTTCATCTTCAACAAAAACTTCTATCTGATATTCTAGAGGAAAAGATTACGAGGTTTGGTAGCGCTGACGAAGGAATATCTAAAATAAAACACAGACTCTCCCGTAAAAGAGTTTTGTTGGTTCTTGATGATGTGGATGAGACTGAACAGTTAGAACGACTTGCAGGGGGGTGTGATTGGTTTGGTTGTGGAAGCAAGGTCATTATAACAACAAGACATAAGCAATTGCTCATTGTTCATAATGTTAAAAGAACATATGAATTGACGGAGCTAGATGATCATGATTCTCTTGAACTCTTTTGTTGGCATGCCTTTCGTATGAGCCTACCCCCTAAAGGCTATGAAAAGATGTCTAGTCATGTGATCAGTTATGCAAAGGGCATTCCTCTTGCTTTAAAATTAGTTGGCGCCAATTTAGCAAATAAAAACTTAGAGGAATGGAGGTCTACATTGGAACAATATGATCGGGTTCCAGAAACAACATTACATGAAGTACTAAAGATAAGTTATGACTGCTTACAAGATGGTGCTAAGATTATTTTCTTGGACATTGCTTGTTTCTTTGAAGAGGAGATATTGGGTTCTATTGATGAGATAGTAGAAGCTTGCGATTATGGTGCAAGGTTTTATATTGAAGTGCTTATTGATAGATCTCTTTTAGCTATTAATGATGATGATCATTTGTACATGCATGATCTGATAAAACAAATGGGTAGAGAGATTGTTAGAAAGGAGGCACCATTGAATCCTGGCGAACGTAGTAGATTGTGGAATTATAAAGATGTTCTTAAAGTACTACATGAAAATTCTGGAAGTACTAAAATTGAAGGAATAATGTTTGATCCTCCTCAACATGAGGAAGTGGAGTGGAGTGGTATAGCCTTTGAGAAGATGAATAATCTTAGAATTCTCATTGTCCGAAAGGCCCAATTTTCAATTGGCCCTAGATATCTTCCCAATAGTTTGAGATGGCTTGAATGGCAGGGATATCCTTTTACAGAATTACCGCCAAATTTTTCTCCAAACAAGCTAGTTGTCTTCAAGTTATGTTTCAGTCCTTTCAGGTTGGAAGAGCCATTCAAGAGATTTGAATATTTGACATGTATGAATTTCTCACATTGTGAATTCATAACTGAAGTACCTAACATGTCTCAATTCCAAAGTTTAAGGAAACTGTTGTTTAGAGACTGTTACAACTTGATCAAAGTTCATGATTCAGTGGGATCTCTCTCCAAGCTGGTGGAATTAGATGTTGGGGGGTGCGTCAAACTTACAAGCTTTCCACATGAAATCAATATGCCATCTCTTCAGAGTATTGATATGAGTCACTGCAAGAGTCTTGACTACTTCTCACATGTGGGAAAAATGGATGCACTAACCGATGTTTGGGTTGAAGACACTTCTATCAAGGAGCTCCCACCTTCCATTGGAAATCTTGCCGGGCTTGAATCTTTAAATTTAAGCTCTTGCAGAAATCTTAAAGAGCTGCCTAACAGCTTATTCACATGTTCACCTAACTCTGAAGCTTTTCCAGAATTTGATAGAGTTAAATCTATCAGGGAATGA 2298 0.3908 MAIQPAASSSHTFTKYRYDVFLSFRGEDTRHSFTVILYDALLRKGINAFIDDRKLGKGEEISPTLLKAIERSRISIIVLSRNYATSTCCLEELAHIIWCKKQKNQVVMPIFYKVDPLDVQYQRNNFEEAMATLEDRFRDDLEKVWKWRYEIGFIERIVEYVYAMLPPKPYHNIEHMVGLQPRVEKVISLLNKSDKGDCMLGIHGIGGIGKTTLAKAIYNSILYKFEGACFLFDVNEASKKFQGIVHLQQKLLSDILEEKITRFGSADEGISKIKHRLSRKRVLLVLDDVDETEQLERLAGGCDWFGCGSKVIITTRHKQLLIVHNVKRTYELTELDDHDSLELFCWHAFRMSLPPKGYEKMSSHVISYAKGIPLALKLVGANLANKNLEEWRSTLEQYDRVPETTLHEVLKISYDCLQDGAKIIFLDIACFFEEEILGSIDEIVEACDYGARFYIEVLIDRSLLAINDDDHLYMHDLIKQMGREIVRKEAPLNPGERSRLWNYKDVLKVLHENSGSTKIEGIMFDPPQHEEVEWSGIAFEKMNNLRILIVRKAQFSIGPRYLPNSLRWLEWQGYPFTELPPNFSPNKLVVFKLCFSPFRLEEPFKRFEYLTCMNFSHCEFITEVPNMSQFQSLRKLLFRDCYNLIKVHDSVGSLSKLVELDVGGCVKLTSFPHEINMPSLQSIDMSHCKSLDYFSHVGKMDALTDVWVEDTSIKELPPSIGNLAGLESLNLSSCRNLKELPNSLFTCSPNSEAFPEFDRVKSIRE 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5039g00016 765 PRINTS Disease resistance protein signature 199 214 - -
Pral5039g00016 765 PRINTS Disease resistance protein signature 369 383 - -
Pral5039g00016 765 PRINTS Disease resistance protein signature 675 691 - -
Pral5039g00016 765 PRINTS Disease resistance protein signature 276 290 - -
Pral5039g00016 765 Gene3D - 167 329 IPR027417 -
Pral5039g00016 765 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 173 - -
Pral5039g00016 765 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 744 IPR044974 GO:0006952
Pral5039g00016 765 Gene3D - 12 166 IPR035897 -
Pral5039g00016 765 SUPERFAMILY L domain-like 524 747 - -
Pral5039g00016 765 Pfam NB-ARC domain 182 400 IPR002182 GO:0043531
Pral5039g00016 765 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 156 IPR035897 -
Pral5039g00016 765 Coils Coil 381 401 - -
Pral5039g00016 765 Gene3D - 334 418 IPR042197 -
Pral5039g00016 765 Pfam TIR domain 18 157 IPR000157 GO:0007165
Pral5039g00016 765 SMART till_3 17 164 IPR000157 GO:0007165
Pral5039g00016 765 SUPERFAMILY "Winged helix" DNA-binding domain 406 510 IPR036390 -
Pral5039g00016 765 Gene3D Ribonuclease Inhibitor 693 750 IPR032675 -
Pral5039g00016 765 ProSiteProfiles TIR domain profile. 16 165 IPR000157 GO:0007165
Pral5039g00016 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 428 IPR027417 -
Pral5039g00016 765 Gene3D Ribonuclease Inhibitor 535 692 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5039g00016 Pral-Chr5039 161211 165544 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5039g00016 18 745 WRKY Transcription Factor Family AT4G12020 29.443 1.42e-85 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5039g00016 - - pcin:129286217 1095.49