Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5039g00009 ATGGCCATTCAAGTTTCATCCCATAGCTCCATCGGCAAACCCAAATACAGATTTGATGTTTTTTTGAGTTTTAGAGGCGAAGATACTCGCCATTCCTTTGCTGTGCCTCTCTACAATGCTTTGCGACGTAAGGGAATCAATGCCTTCATTGACGACAAGATGCTTGGCAAAGGGGAAAAGATTTCACCTACGCTTCTTAAAGCCATTGAGAGATCGAGGATTTCCATTATTGTATTCTCCAGCAACTACGCTACTTCTACATGGTGCTTGGATGAACTTGCTCATATAATTCGATGCAAGAATGAGAAGAACCAGCTGGTTATGCCCATCTTTTACAAGGTGGATCCAATGGCTGTTCAGTATCAGAGAGACAGCTTTGCAACAGCCATGGCTGCTCATGAAGATATATTCAGAGATGATCCAGAGAAAGTGCAGAAATGGAAATCTGCTTTGTCTGAAGCAGCTTCTCTGTCAAAGGCCTGGATTTCTGAAGATTGGAGCGAAATTGGGTTTATGGAAAGGATTGTTAAAGATGCGTATGCTATGTTGCCACCTAAACAATTACATAACATTGGGTACACGGTTGGACTTGAGCCTCGTGTGGAAGAAGTGATTTCACTTTTAAATCAATCCAATGATAGAGTTTGCATGTTGGGCATTCATGGAATTGGAGGAATTGGCAAAACAACCCTTGTAAAATCCGTCTATAATTCAATGTTTTACCAATTTGAAGGTGCATGTTTTTTGTTTGATGTCAAAGAAGCACCAAAGAAATACCAGGGCATCGTTCGCCTCCAACAGAAACTTCTATCAGAGACTCTTGGGGAGAAGATTATGATGATTGGGAGTGTTGATAAAGGAATATCAAGAATAAAACATAGACTTTCTCATAAAAAGGTTCTTTTGGTTCTTGATGATGTTGATGAGGTTGAACAGTTAGAACAACTTGCGGGAGGGTGTGACTGGTTTGGTTTTGGAAGCAAAGTTATTATAACAACAAGAAATAAGCAAATGCTAGTTGCACACAATGTTGAAAAAACATATGAAATGATGAAGCTGAATGAGTATGACTCTTGTGAGCTCTTTTGTTGGCATGCCTTCCATGAGAAGCAACCTCCAACAACCTATCAAGATATGTCTAGTCGTGCAATAAGTTATGCACAAGGCCTTCCTCTGGCATTAAAAGTAATAGGCTCCAATTTGGCAAATAAAAATTCAGAGGAATGGAAATCTATATTGGAACAATATGAAAGAATCCCAGAAAAAACAATTCATGAGATTCTAAAGATAAGCTATGATTGCTTACAGGCTGGTGCTAAGCGTTCTATTTTGAACTTCTTGTCGATAAATCTCTAA 1356 0.3916 MAIQVSSHSSIGKPKYRFDVFLSFRGEDTRHSFAVPLYNALRRKGINAFIDDKMLGKGEKISPTLLKAIERSRISIIVFSSNYATSTWCLDELAHIIRCKNEKNQLVMPIFYKVDPMAVQYQRDSFATAMAAHEDIFRDDPEKVQKWKSALSEAASLSKAWISEDWSEIGFMERIVKDAYAMLPPKQLHNIGYTVGLEPRVEEVISLLNQSNDRVCMLGIHGIGGIGKTTLVKSVYNSMFYQFEGACFLFDVKEAPKKYQGIVRLQQKLLSETLGEKIMMIGSVDKGISRIKHRLSHKKVLLVLDDVDEVEQLEQLAGGCDWFGFGSKVIITTRNKQMLVAHNVEKTYEMMKLNEYDSCELFCWHAFHEKQPPTTYQDMSSRAISYAQGLPLALKVIGSNLANKNSEEWKSILEQYERIPEKTIHEILKISYDCLQAGAKRSILNFLSINL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5039g00009 451 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 157 IPR035897 -
Pral5039g00009 451 Pfam TIR domain 18 163 IPR000157 GO:0007165
Pral5039g00009 451 ProSiteProfiles TIR domain profile. 16 183 IPR000157 GO:0007165
Pral5039g00009 451 Gene3D - 13 185 IPR035897 -
Pral5039g00009 451 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 449 IPR044974 GO:0006952
Pral5039g00009 451 SMART till_3 17 157 IPR000157 GO:0007165
Pral5039g00009 451 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
Pral5039g00009 451 PRINTS Disease resistance protein signature 217 232 - -
Pral5039g00009 451 PRINTS Disease resistance protein signature 387 401 - -
Pral5039g00009 451 PRINTS Disease resistance protein signature 294 308 - -
Pral5039g00009 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 442 IPR027417 -
Pral5039g00009 451 Pfam NB-ARC domain 199 435 IPR002182 GO:0043531
Pral5039g00009 451 Gene3D - 352 436 IPR042197 -
Pral5039g00009 451 Gene3D - 186 351 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5039g00009 Pral-Chr5039 119960 122677 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5039g00009 12 416 WRKY Transcription Factor Family AT4G12020 28.434 1.49e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5039g00009 - - pcin:129286217 629.787