Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5039g00005 ATGGCAACTCAAATCGCAGCACCGTCATCGTTTGGCTTCCCTCATGAAACCAAATATAGATATGATGTTTTTCTGAGTTTCAGAGGCAAAGATACTCGCCACTCCTTCACTGTCTTCCTCTATGAAGCTTTGCGTCGGAAGGGAATCAACGCCTTTATCGACGACAAGAAGCTTGGGAAAGGAGAAGAAATCTCACCTACGCTTCTTAAAGCCATTGAGAGATCAAGGATTTCCATTATTGTGTTCTCTAGGGACTATGCTACTTCCACATGGTGCCTTGAGGAACTCGCCCACATCATTTGGTGTAACAAGCAGAAGAATCAGGTGGTTATGCCCATCTTTTACAAGGTTGATCCATTGGATGTTCGGTATCAAAGAAATAGCTTTGAAGAAGCCATGGCTACCCTTAAAGATAGGTTCAGAGATGACTTAGAGAAAGTGTGCAAATGGAAGTCTGCTTTGTTTGAAGCTGCTAGTTTGTCATCAGCATGGCTCTTCCAAGATGGATACGAATTTGGGTTTATTGAAAGGATTGTTGAAGATGTGTATGCTATGCTTCCTCCTAAACCATATCATAACATAGAACACATGGTTGGACTTCAGCCTCGGGTAGAAATAGTGATCTCGCTTCTAAATAAATCTGACAAAGGCGTTTGCATGTTGGGCATTCATGGAATTGGCGGAATTGGCAAAACAACCCTTGCAAAGGCTATCTATAATTCAATCTTCTACCAATTTGAAGGTGCGTGTTTCTTGTTTGATGTCAATGAGGCATCAAAAAAATTTCAGGGCATTGTTCATCTTCAACAAAAACTTCTATCTGAGACTCTTGAGGAAAAGATCATGAGGTTTGGTAGTTCTGACGAAGGAATGTCTAAAATAAAACACAGACTCTCTCATAAAAGAGTTTTGTTGGTTCTTGATGATGTTGATGAGATTGAACAATTAGAACGACTTGCAGGAGGGTGTGATTGGTTTGGTTGTGGAAGCAAAGTCATTATAACAACAAGAAATAAGCAATTGCTAATTGCTCATAATGTTCAAAGAACATATGAATTGGTGGAGCTAAATCATCATGACTCTCTTGAACTCTTTTGTTGGCATGCCTTTCATATGACCCTACCTCCAAAAGGCTATGAACAAATGTCTAGTCATGTGATGAGTTATGCAAAAGGCATTCCCCTCGCTTTAAAATTAATTGGTGCCAATTTAGCAGATAAAAACTTAGAGGAATGGAGGTCTACACTGGAACAATATGGTCAAATCCCAGAAAGAACAATACATGAAAGTACATAG 1296 0.3966 MATQIAAPSSFGFPHETKYRYDVFLSFRGKDTRHSFTVFLYEALRRKGINAFIDDKKLGKGEEISPTLLKAIERSRISIIVFSRDYATSTWCLEELAHIIWCNKQKNQVVMPIFYKVDPLDVRYQRNSFEEAMATLKDRFRDDLEKVCKWKSALFEAASLSSAWLFQDGYEFGFIERIVEDVYAMLPPKPYHNIEHMVGLQPRVEIVISLLNKSDKGVCMLGIHGIGGIGKTTLAKAIYNSIFYQFEGACFLFDVNEASKKFQGIVHLQQKLLSETLEEKIMRFGSSDEGMSKIKHRLSHKRVLLVLDDVDEIEQLERLAGGCDWFGCGSKVIITTRNKQLLIAHNVQRTYELVELNHHDSLELFCWHAFHMTLPPKGYEQMSSHVMSYAKGIPLALKLIGANLADKNLEEWRSTLEQYGQIPERTIHEST 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5039g00005 431 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 160 IPR035897 -
Pral5039g00005 431 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Pral5039g00005 431 Pfam NB-ARC domain 205 419 IPR002182 GO:0043531
Pral5039g00005 431 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Pral5039g00005 431 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 420 IPR044974 GO:0006952
Pral5039g00005 431 SMART till_3 20 160 IPR000157 GO:0007165
Pral5039g00005 431 Pfam TIR domain 21 182 IPR000157 GO:0007165
Pral5039g00005 431 Gene3D - 15 187 IPR035897 -
Pral5039g00005 431 Gene3D - 188 354 IPR027417 -
Pral5039g00005 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 428 IPR027417 -
Pral5039g00005 431 PRINTS Disease resistance protein signature 220 235 - -
Pral5039g00005 431 PRINTS Disease resistance protein signature 390 404 - -
Pral5039g00005 431 PRINTS Disease resistance protein signature 297 311 - -
Pral5039g00005 431 Gene3D - 355 431 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5039g00005 Pral-Chr5039 66194 67700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5039g00005 21 402 WRKY Transcription Factor Family AT4G12020 28.460 2.61e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5039g00005 - - pcin:129286217 674.47