Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5036g00018 ATGTTTTCTTTGGCCTCTTCATCATCCTCTCAGTCCAAACCCAAATTGACTTTCGAATACGATGTCTTCTTCACTTTCGATGGTTTGGGAAGTCGTCTGAGAACCTTTCTTGAGAAATGTTTGAGTGACGCAGGAATGAAAACTTGCATTCATGACATGGTCAGGGATTACTCCAGATGGAGGATGATAGAAAGGTGTAGAATTGTGATGGTGGTAATCACACCAGAGTTGGTTGCGTCCGACATATGTCTTGACAGATTGAAGAAAATAATATCGTATCCCAAAACAGTGCTTCCTTTGTTCTATGGAGTGAGCCACGACGAATTTCGTATGCAGTTCGAGAGTTTCTATTTGCGAAAATTTCGCATTGAAGGAATTCCCGATGGAGCGAATCTCAGTGAATTGAGTGAAGCTTACGGATTGAGATTATGGGAATTTGGGGGTTATCGGAATCCGCAACGAAGAGCCAACGCTGAGTGTTCTTCGCTATATGGCTTCACACTGTCGCATGATTTTGGAATTGAGGCTGAGTTACTTGATGATGTTGTTAAAACTATCACAATGAGGCTAGACAATAGGGAATATATTTTCGTTGCTCACCATCCAGTCGGTTTAGAGTCTCGCATGCAAGATATCATCCAATTTCTAAGTGAATCAAATGGGATTACCATAATAGGCATTTGGGGGATGGGAGGGATTGGTAAGACGACGATGGCTAAAACTATCTATAATGAAATGGGGCAAAGCTTTGTGGGAAAGAGTTTCCTAGCAAATATTAGGGAAGTATGGAAGCAAGACAATGGTCAAGTTTATTTGCAAGGACAACTTCTCTCTAGCATCTTAAGAACAAGAAGGATCAACCTACTGAATGTAGGGATAGGAAAATCTATAATCAAGCAAAGTCTCTGTCAAAAAAGAGTATTTCTTGTATTGGATGATGTGGATAATGAAGACCAACTCAAAGTGTTATGTGGCAGTCGTCAGTGGTTTGGTCATGGTAGTAGAATAATTATTACTACAAGAGATGAACGCCTACTTCAGATCCTTCAAGTGGATAAAGTATTTAATGTGAGGGGAATGGATGATAATGAATCTATTGAGCTTTTCAGCTGGCATGCTTTTAAGCAAGCGCTTCCTGAAAGAAATTTCACTGAACTTTCAAGAAAGGTAGTAGCATACTGTAGAGGTCTGCCACTAGCTCTTGAAATCCTTGGCTCATATTTGTTTGATAGGAAAATACCTTATTGGGAAAGCACTTTGAGTAAATTGGAACGAATTCCAGATGGTAAAATATATGAAATTCTAAAAATAAGTTATGATGATTTGAGTGAACAAATAGAGAAAGAGCTTTTCTTGGACATATGTTGTTTTTTCATTGGGAAAGACAGAAGCTATGCTATTCAGGTATTAGATGGTTGTGGACTTTATGCAGAAACTGGAATTACCCATCTAATTGAGCGAAGCCTAGTAAAGGTTGTAAAATCTGGAAACAAAAGCATACTTGATATGCATGGCTTAATACGTGATATGGGAAGAGAAATCATTCGTGGGCAATCACCAGAGGAGCCAGAAAAGCGTACAATATTATGTTTTAACGATGAGGTGTTGGATGTGTTAGAAAGCAACACTGGAACAATAGCTACCAAGGGATTATCATTAAAAATGCCAAGAAGCAATTCAGTATCCTTCGGTACAAATGCATTTAAGAATATGAAGAGGCTTCGTTTACTCAATCTTGATAATGTACAGCTTAATGGAGAATATGATTATCTATCAAAAGAATTGAGATGGCTTTGTTGGCGTGGATTTCTCTTAGAGAGTTTGCCAACAGACTTTAATGTAAAGAAGATAGTCGCCATTGACTTAAAGTGGAGTAATCTCACAAAAGTGTGGGAGAAAAGTCAGGTGCTGGAATCCTTGAAAACTCTCAATGTGAGTCATTCTCATTACCTAACAGAAACACCTGACTTTTCAAAATTACCACATCTTGAGAAGTTGATACTTAAAGACTGTCCACGTTTGTCTATGATTCACCCTTCCATTGGAAATCTTAGGCATCTTATTATGTTGAATTTGAAAAATTGCATTGGCTTAGAGCATCTCCCAAGAAGTATATATGACTTGAAATCTTTGAGAACTCTCAATCTTTTTGGTTGTTCAAAGATTGAAAGGTTGGATGAAGACATTGAGAAAATGGAATCCTTAACGGTTTTGGTGGCAACTCAAACTGCTATAACACAAGCACCCATCTCACTGGGATGGAATGAAAAAGGATTTGGAGTTAATTCTCTTCCCGGAGACAATTATCCTCATTGGCAGAATTTCAAAGGTGAAGGATGTTCAATATGCTTTGAAGTTCCTAAAATTATTGGCAGAAGCTTAAAAGGATTGATTCTGTGCATAATCTATTTGTCTTCTCAAGACAACATGACGTCTGTATATTATCCTGTTGGTGTCCTGGTATCAAATCATACAAAGGGTACCATTAAATTGTACCAAAAAGATGCAACAACTGCTTCAAATGATGAAGATAATTGGCAAGACATCATCTCTAATTTGGAGACTGGTAACAGAGTGGAGGTTATAGTCACTTTTGCTTGTGAATTGAAAGTAAAACACACAGTTGTCTATTTGGTATATGATGAAGACGCTATTAAGAGAATCATGTACTGA 2673 0.3782 MFSLASSSSSQSKPKLTFEYDVFFTFDGLGSRLRTFLEKCLSDAGMKTCIHDMVRDYSRWRMIERCRIVMVVITPELVASDICLDRLKKIISYPKTVLPLFYGVSHDEFRMQFESFYLRKFRIEGIPDGANLSELSEAYGLRLWEFGGYRNPQRRANAECSSLYGFTLSHDFGIEAELLDDVVKTITMRLDNREYIFVAHHPVGLESRMQDIIQFLSESNGITIIGIWGMGGIGKTTMAKTIYNEMGQSFVGKSFLANIREVWKQDNGQVYLQGQLLSSILRTRRINLLNVGIGKSIIKQSLCQKRVFLVLDDVDNEDQLKVLCGSRQWFGHGSRIIITTRDERLLQILQVDKVFNVRGMDDNESIELFSWHAFKQALPERNFTELSRKVVAYCRGLPLALEILGSYLFDRKIPYWESTLSKLERIPDGKIYEILKISYDDLSEQIEKELFLDICCFFIGKDRSYAIQVLDGCGLYAETGITHLIERSLVKVVKSGNKSILDMHGLIRDMGREIIRGQSPEEPEKRTILCFNDEVLDVLESNTGTIATKGLSLKMPRSNSVSFGTNAFKNMKRLRLLNLDNVQLNGEYDYLSKELRWLCWRGFLLESLPTDFNVKKIVAIDLKWSNLTKVWEKSQVLESLKTLNVSHSHYLTETPDFSKLPHLEKLILKDCPRLSMIHPSIGNLRHLIMLNLKNCIGLEHLPRSIYDLKSLRTLNLFGCSKIERLDEDIEKMESLTVLVATQTAITQAPISLGWNEKGFGVNSLPGDNYPHWQNFKGEGCSICFEVPKIIGRSLKGLILCIIYLSSQDNMTSVYYPVGVLVSNHTKGTIKLYQKDATTASNDEDNWQDIISNLETGNRVEVIVTFACELKVKHTVVYLVYDEDAIKRIMY 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5036g00018 890 SUPERFAMILY "Winged helix" DNA-binding domain 430 519 IPR036390 -
Pral5036g00018 890 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 739 IPR044974 GO:0006952
Pral5036g00018 890 PRINTS Disease resistance protein signature 224 239 - -
Pral5036g00018 890 PRINTS Disease resistance protein signature 301 315 - -
Pral5036g00018 890 PRINTS Disease resistance protein signature 706 722 - -
Pral5036g00018 890 PRINTS Disease resistance protein signature 394 408 - -
Pral5036g00018 890 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 120 IPR035897 -
Pral5036g00018 890 Gene3D - 15 189 IPR035897 -
Pral5036g00018 890 Pfam TIR domain 20 113 IPR000157 GO:0007165
Pral5036g00018 890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 454 IPR027417 -
Pral5036g00018 890 Pfam NB-ARC domain 206 439 IPR002182 GO:0043531
Pral5036g00018 890 SMART till_3 19 142 IPR000157 GO:0007165
Pral5036g00018 890 Gene3D - 360 443 IPR042197 -
Pral5036g00018 890 Gene3D Ribonuclease Inhibitor 540 749 IPR032675 -
Pral5036g00018 890 SUPERFAMILY L domain-like 551 806 - -
Pral5036g00018 890 ProSiteProfiles TIR domain profile. 18 139 IPR000157 GO:0007165
Pral5036g00018 890 FunFam Disease resistance protein (TIR-NBS-LRR class) 361 443 - -
Pral5036g00018 890 Gene3D - 190 354 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5036g00018 Pral-Chr5036 179527 186804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5036g00018 203 723 WRKY Transcription Factor Family AT5G45050 32.668 2.17e-72 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5036g00018 - - pcin:129288830 848.195