Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5034g00005 ATGGTGGCACACGGAGGTTCTCTGTCAGCGGCGGCTAAACAAGCGGAGCAACTGAAACTACTCGGAAACTCTTGTTTCAAAAAAGATCGTTTCGGGGCCGCCATCGATGCCTACACCGAGGCAATCACTCTGTGCCCTAACAATACGGTTTATTGGACGAATCGTGCCCTTTGTCACCGGAGACGCAATGACTGGGCTAAGGTAGAAGAAGACAGCCGGAGGGCTATTCAACTAGACAACAAGTCAGTCAAGGCCCATTACATGTTGGGGCTTGCGCTGCTGCAGAGACAAGAATATATCGAAGGGGTCAGAGAATTAGAGAAGGCTTTGGATCTTGGGAGGGGTGCCAATCCTAACGGCTATATGGTAGAGGAGATCTGGCAGGAGCTTGCAAGAGCAAAATACCTTGAGTGGGAAAATGCATCTACCAAGAGATCATGGGAATTGCAGCGTTTGAAATCAACTTGTGAGTGTGCTCTAAATGAAAAGTATTCTTGTCATGTCTCCCAAATGGAAGGGTTTATAGATGATGTTGATGCTTTGCATTCAGAAGAACTCAAAGCTTTAGAAAGAGTTTTTTGTGAAGCTGCAGAGGCTGACATGCCTACCGAGATCCCAGATTACTTATGCTGTAGAATCACTCTTGATATTCTTCGAGATCCCGTAATTACTCCAAGTGGACATACATATGAGAGGGCAGTAATTCTTCAACACCTTCAAAAGGTAACTAACTTTGATCCAATTACGCGGGAGCCACTTAATCCATCACAGCTTGTGCCAAATTTGGCAATAAAAGAAGCAGTTCAAGCATTCTTGGACAAACATGGGTGGGCGTACAAAGTATAG 846 0.4539 MVAHGGSLSAAAKQAEQLKLLGNSCFKKDRFGAAIDAYTEAITLCPNNTVYWTNRALCHRRRNDWAKVEEDSRRAIQLDNKSVKAHYMLGLALLQRQEYIEGVRELEKALDLGRGANPNGYMVEEIWQELARAKYLEWENASTKRSWELQRLKSTCECALNEKYSCHVSQMEGFIDDVDALHSEELKALERVFCEAAEADMPTEIPDYLCCRITLDILRDPVITPSGHTYERAVILQHLQKVTNFDPITREPLNPSQLVPNLAIKEAVQAFLDKHGWAYKV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5034g00005 281 Pfam Tetratricopeptide repeat 15 48 IPR001440 GO:0005515
Pral5034g00005 281 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Pral5034g00005 281 SUPERFAMILY TPR-like 12 134 IPR011990 GO:0005515
Pral5034g00005 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Pral5034g00005 281 SUPERFAMILY RING/U-box 198 279 - -
Pral5034g00005 281 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Pral5034g00005 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Pral5034g00005 281 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Pral5034g00005 281 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Pral5034g00005 281 SMART tpr_5 49 82 IPR019734 GO:0005515
Pral5034g00005 281 SMART tpr_5 15 48 IPR019734 GO:0005515
Pral5034g00005 281 SMART tpr_5 83 116 IPR019734 GO:0005515
Pral5034g00005 281 Gene3D Tetratricopeptide repeat domain 7 157 IPR011990 GO:0005515
Pral5034g00005 281 CDD RING-Ubox_CHIP 205 275 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5034g00005 Pral-Chr5034 53840 57178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5034g00005 11 281 U-box Gene Family AT3G07370 67.159 2.19e-136 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5034g00005 K09561 - gmx:100796519 442.58