Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5034g00004 ATGGCGAAGCCGGGAGTGTTGGAAGCTGATCCAACGGTGACGGCGAAGGCAATGGAGCTGAAGAAGGAGTTGCAGAGATTGGTAAAGTCAATTGTTGAAGATGAGAATCATTACGGCATTGAGGCCATCGATACGACCATGGAGACGCTGTCGTTGCTGAGGGAGCTGAAGCTCAGCAAGAGATCGACGACGACGTCGTCGTCGTCGTCTTCGTCACTGTCTTTGACGGTTCGCCATAAAACCGGCTTAAATTGCCCCGAAGAATTCAAATGCCCTCTTTCCAAGCAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGAGAGAACGTTCATTCAAAAGTGGCTGAAAGCCGGCAACCGGACATGTCCACGGACGCAGCAAGTCCTCTCACACACTGTTCTCACTCCAAATAACCTAATAAGGGAAATGATTGAGAAATGTTGTGGAACCCAAGGGCTTGAATTTTCCAACCATGTTCACTATATCAATGAGGAAGCTGTAATAGAACCAGACCATGGTCATTTTCTTTCTTTGCTTGAGAAGGTGTCTTCATCAGCACTTTCTGAACAGAAAGCTGCAGCAAAGGAGCTCCGGATTCTGACAAAGAAAATGCCTTCTTTCCGGGTATTTTTCGGTGAGTTTTCAGATGCCGTTCCCAAAGTGCTTAAACCGATCTGTGGGAGTCACTCTCTTGGTAATGTTCACCCTGACCTCCAAGAAGATGTTATCACAACACTCCTCAATATCTCCATCCATGACAACAACAAGAAGCTTGTGGCAGAAACTCCCTTGGTAATTCCTCTCCTCATGAGGGCATTGAGATCGGGAACGATAGCAACACGAAGCAATGCCGCCGCCGCCCTTTTCACTTTGTCGGCTCTAGACTCAAACAAGGAACTTATAGGGAAATCTGGAGCCTTGAAGCCTCTGGTTGACCTTTTGGAAGAAGGGCATCCCTTAGCCATGAAAGATGTTGCATCGGCAATTTTTACTTTATGTGTCCTTCAAGAGAACAAGGCAAGAGCAGTGAAGGATGGCACGGTGAAGGTGATTGTAAAGAAAATTGTTGACCGGGTTTATGTCGACGAACTACTAGCCATTCTCGCCTTGCTCTCAAGTCACCAGAAGGCAATTCAGGACATGGGAGAGCTTGGAGCTGTTCCTAGCTTGCTGAGTTTAATCAGAGAGACCACTTGTGAACGAAACAAAGAGAACTGCATTGCAATCCTTCAGACTATCTGTCTTCATGACAGAACCAGGTTGAAGGAGATAAAAGAAGAAGAGAACAGACATAAAACAATCTCAGAGCTTGCACAAAATGGAACTTCAAGAGCTAAGAGGAAGGCTGCTGGAATCCTTGAGAGACTAAACAGGGTTGTTAATATTACACACACTGCATAA 1413 0.4593 MAKPGVLEADPTVTAKAMELKKELQRLVKSIVEDENHYGIEAIDTTMETLSLLRELKLSKRSTTTSSSSSSSLSLTVRHKTGLNCPEEFKCPLSKQLMRDPVIVASGQTYERTFIQKWLKAGNRTCPRTQQVLSHTVLTPNNLIREMIEKCCGTQGLEFSNHVHYINEEAVIEPDHGHFLSLLEKVSSSALSEQKAAAKELRILTKKMPSFRVFFGEFSDAVPKVLKPICGSHSLGNVHPDLQEDVITTLLNISIHDNNKKLVAETPLVIPLLMRALRSGTIATRSNAAAALFTLSALDSNKELIGKSGALKPLVDLLEEGHPLAMKDVASAIFTLCVLQENKARAVKDGTVKVIVKKIVDRVYVDELLAILALLSSHQKAIQDMGELGAVPSLLSLIRETTCERNKENCIAILQTICLHDRTRLKEIKEEENRHKTISELAQNGTSRAKRKAAGILERLNRVVNITHTA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5034g00004 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 164 IPR013083 -
Pral5034g00004 470 ProSiteProfiles U-box domain profile. 84 158 IPR003613 GO:0004842|GO:0016567
Pral5034g00004 470 Coils Coil 17 37 - -
Pral5034g00004 470 SUPERFAMILY RING/U-box 83 159 - -
Pral5034g00004 470 SMART arm_5 256 297 IPR000225 GO:0005515
Pral5034g00004 470 SMART arm_5 298 338 IPR000225 GO:0005515
Pral5034g00004 470 SMART arm_5 378 419 IPR000225 GO:0005515
Pral5034g00004 470 SMART Ubox_2 88 151 IPR003613 GO:0004842|GO:0016567
Pral5034g00004 470 Gene3D - 218 365 IPR011989 -
Pral5034g00004 470 FunFam RING-type E3 ubiquitin transferase 169 466 - -
Pral5034g00004 470 FunFam RING-type E3 ubiquitin transferase 85 157 - -
Pral5034g00004 470 Pfam U-box domain 86 150 IPR003613 GO:0004842|GO:0016567
Pral5034g00004 470 Gene3D - 366 464 IPR011989 -
Pral5034g00004 470 PANTHER U BOX DOMAIN-CONTAINING 20 460 - -
Pral5034g00004 470 Coils Coil 463 470 - -
Pral5034g00004 470 SUPERFAMILY ARM repeat 177 460 IPR016024 -
Pral5034g00004 470 CDD RING-Ubox_PUB 86 138 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5034g00004 Pral-Chr5034 43010 46672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5034g00004 147 470 U-box Gene Family AT3G07360 61.818 2.96e-134 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5034g00004 - - pcin:129287872 805.053