Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5031g00003 ATGGCGAGGGAGAAAATTCAGATTAGGAAGATCGACAACGCCACGGCGAGGCAGGTGACGTTCTCGAAGCGACGCAGAGGACTTTTCAAGAAAGCTGAGGAGCTCTCAGTTCTCTGCGATGCAGATGTTGCTGTTGTGATCTTCTCCTCCACCGGCAAGCTCTTTCACTACTCTAGTTCAAGCATGAAAAAAATACTGGAAAGGCGTCATTTGCACTCAAAAAACCTCTCGAAGCTGGACCAACCGTCTCTTGAGTTGCAGCTAGTTGAGGACAGCAACTACTCGAGTTTGAGCAAGGAGATTACCGAGAAGAGCCGTCAGCTACGGCAAATGAGAGGAGAGGATCTTCAAGGTTTGAATATTGAGGAATTACAGCAACTTGAGACCTCTCTTGAAGCTGGGTTGACCCGTGTAACTGAAACGAAGTCACTGATGATGATGGATGAGATCATTGATCTCGAAAGAAAGGGAATGCAATTAATGGAAGAGAATGAGCGTTTAAAACGTCAGGTGACAGAAATGCCAAGTGAGGAATGTTGTGTTGTGGAAGGTCAGTCATCTGAGTCTGTCGATAATATTTGCTGCTGCACTGGGCATCCTCAAGAATATGATGTCAACTCAGACACGTCCCTCAGATTGGGGCTACCATATTCTGGTTGA 660 0.4636 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVAVVIFSSTGKLFHYSSSSMKKILERRHLHSKNLSKLDQPSLELQLVEDSNYSSLSKEITEKSRQLRQMRGEDLQGLNIEELQQLETSLEAGLTRVTETKSLMMMDEIIDLERKGMQLMEENERLKRQVTEMPSEECCVVEGQSSESVDNICCCTGHPQEYDVNSDTSLRLGLPYSG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5031g00003 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5031g00003 219 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Pral5031g00003 219 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pral5031g00003 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pral5031g00003 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5031g00003 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5031g00003 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5031g00003 219 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5031g00003 219 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pral5031g00003 219 FunFam Transcription factor, MADS-box 13 83 - -
Pral5031g00003 219 Coils Coil 94 114 - -
Pral5031g00003 219 Coils Coil 150 170 - -
Pral5031g00003 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral5031g00003 219 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5031g00003 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5031g00003 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5031g00003 Pral-Chr5031 14322 18019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5031g00003 1 219 MADS-box Gene Family AT2G22540 65.560 3.40e-103 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5031g00003 K-box 8.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5031g00003 - - qsu:112018313 320.857