Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5023g00017 ATGGTCATGGATCACGTTATTGGCGGAAAATTCAAGCTCGGGCGGAAGATTGGGAGTGGGTCGTTTGGCGAGCTTTATCTGGGCGTCAATGTGCAGAATGGAGAGGAAGTAGGTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCCCAACTTCATTATGAGTCAAAACTATATATGCTTCTCCAAGGAGGAACTGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGAGATTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTTTAGAAGACTTGTTTAACTATTGCAATCGAAAATTCTCTCTAAAAACAGTTCTGATGCTAGCAGATCAACTGATAAACAGAGTTGAATACATGCATTCCCGAGGTTTTCTTCACCGCGATATAAAACCTGATAACTTTTTAATGGGTTTAGGCCGCAAAGCAAACCAGGTGTACGTAATTGATTATGGCCTTGCAAAAAAGTATCGGGATCTCCAAACGCATAAGCACATACCATACAGGGAAAACAAGAATCTAACCGGAACTGCTCGGTATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATTTAGAATCACTTGGATATGTGCTCATGTACTTCTTGAGAGGAAGTCTCCCTTGGCAAGGCTTGAAAGCTGGCACTAAGAAGCAGAAATATGACAAAATCAGTGAAAAAAAGATGCTTACTCCAATAGAGGTCCTTTGCAAGTCATATCCTTCAGAGTTTACATCTTACTTTCACTACTGCCGATCATTGCGGTTTGATGACAAACCGGATTATGCATACCTTAAGAGACTCTTCCGTGACCTATTTATTAGAGAAGGTTATCAGTTTGATTATGTATTTGATTGGACTATACTAAAATATCCACAAATTGGATCAAGTTCCAGGTCGCGGCAAAGTGGGAAGCAAGTTATAAACCAAGGACCATCTGCAGAGAGAGTAGAAAGGCCTCTAGACCCTCGGGAGCGACTCCCAGGTTCAGTTGAAGCATTTGCTAGAAGAAGTGGCTCTGGCCTCCTTAGTGATCATTCTAGGCATAGGTCGTCAGATGCGGTGCCCTCATCCAAAGTAGTGCATCCTGACTCTGAGAGGGCTCGTAGTTCTTCGCGCACTGGTAGTGCCTCAAAAAGGCCCGTCGTATCAAGCAGTCGACCGAGCTCCTCTGGTGAGCCTAGTGATAGCCGTGCTAGCAGATTAGTGTCAAGCAGTGGCCGGCTATCGACTACTCAAAGGATTCAGCCTGGTTTTGAGTCCAAATCATCATCATTTACTCGTGCTACAACATCAAGAGGTGGCCGTGACGATGCAATAAGGAGCTTTGAGCTTCTGTCAATTGGCACAGGGAAAAGGAAATGA 1383 0.4411 MVMDHVIGGKFKLGRKIGSGSFGELYLGVNVQNGEEVGVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRSRQSGKQVINQGPSAERVERPLDPRERLPGSVEAFARRSGSGLLSDHSRHRSSDAVPSSKVVHPDSERARSSSRTGSASKRPVVSSSRPSSSGEPSDSRASRLVSSSGRLSTTQRIQPGFESKSSSFTRATTSRGGRDDAIRSFELLSIGTGKRK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5023g00017 460 CDD STKc_CK1_delta_epsilon 10 284 - -
Pral5023g00017 460 MobiDBLite consensus disorder prediction 323 337 - -
Pral5023g00017 460 MobiDBLite consensus disorder prediction 348 375 - -
Pral5023g00017 460 FunFam Casein kinase 1-like protein 3 330 - -
Pral5023g00017 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Pral5023g00017 460 MobiDBLite consensus disorder prediction 302 316 - -
Pral5023g00017 460 FunFam Putative Casein kinase I 3 87 - -
Pral5023g00017 460 Pfam Protein kinase domain 12 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5023g00017 460 Gene3D Transferase(Phosphotransferase) domain 1 1 330 - -
Pral5023g00017 460 MobiDBLite consensus disorder prediction 302 460 - -
Pral5023g00017 460 ProSiteProfiles Protein kinase domain profile. 11 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5023g00017 460 SMART serkin_6 11 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5023g00017 460 MobiDBLite consensus disorder prediction 376 438 - -
Pral5023g00017 460 SUPERFAMILY Protein kinase-like (PK-like) 6 292 IPR011009 -
Pral5023g00017 460 PANTHER CASEIN KINASE-RELATED 10 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5023g00017 Pral-Chr5023 87903 93682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5023g00017 10 215 MAP Kinase Kinase Kinase AT3G06030 25.000 1.75e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pral5023g00017 Pkinase 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5023g00017 K08960 - cave:132177205 764.992