Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5021g00008 | ATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATATCGTGGGATACGACGGAGGACAACCTGAAAGATCATTTCAGCAACTATGGTGATGTTTTGCACGCCTCCGTTATGAGAGAGAAGAATACTGGGAAGCCCAGAGGCTTTGGATTCGTTGTGTTCGCGGATCCTTCGATCCTCGATAGGGTTCTCGAGGAGAAGCACGTAATCGATGGCAGAACGGTAGATGCCAAGAAGGCCTTCTCCAGAGAGGATCAACAAATTTCAGCCACGTCCAGGGCTGGAAATCCCAACTCTTATAGAAATTCTGGAAATGGAGGAAATATGAGGACCAAAAAAATATTTGTTGGTGGGTTGCCTCCGACATTGAGTGAAGAGAAGTTTCGTGAGTATTTTGAGGCTTATGGTCATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGGCCACGTGGATTTGGGTTTATTTCATTTGACACTGAAGATGCAGTTGACAGGGTTTTGCAGAAGCCATTTCACGATTTAAATGGCAAGCAAGTAGAGGTGAAGCGGGCACTTCCGAAGGATGCTAATCCTGGTGCGAGCGGCCGAATGGGTACTGGGGGAGGAGGTGGCAGTGGTTATCAGGGGTACGGGGCATCTGGTGGCAATCAAAATGCATATGATGGTCGGATGGATTCTGGTAGGTATGTGCAGCCTCCAAGCACCGGGGGTGGATTTCCACCTTATGGTTCTTCTGGATATGGTGCTTCCGGGTACGGTTATGGTCCTGCTAATAATGGCATGGGTTTTGCCGGATATGGAAGTTATGGTGGTGCAAGCACTGGGTATGGTGGACCTGCTGGTGCAACCTATGGGAATCCTGGCATCCCCAATGCTGCTTATGCCAGTGGTCCACCTGGTGCTCCAAGGAGTTCATGGCCTGCTCAAGCTCCCTCTGGTTATGGTTCTATGGGCTATGGGAATGCTGCTGCTTGGGGTGCTACTGGTGGCAGTGCTGGATCTGGCGGCACTGGTGGCCCTGGTTCAGCGCCTGCAGGTCAGTCACCCAGTGGAGCTGCTGGTTATGGGAATCAAGGATATGGTTATGGTGGTTATGGTGGGTATGGTGGAAGTGATAGTCCTTATGGGAACCCTGGTGTATATGGTGCTGTGGGCGGGCGATCAGGAAGTGCCCCAAACAGCTATGCTGGTGGTCCAGGAGGAAATGAACCACAAGGGAGTGGTGGTAACTACAATGGAAGTGGCTATGGTGATGCAAATGGAAGTTCAGGATATGGAAATGCTGCATGGAGATCTGAAGCTGCACAACAATCTGGAAATTATGGGACTCCTCAGTTAAATGGTCCTCATGGAGGGCAAGTTGGATACGGAAGCAACTATGGTGGTGCTCAGTCACGGCAGGCCCAACAGCAGTAA | 1425 | 0.5025 | MDSDQGKLFIGGISWDTTEDNLKDHFSNYGDVLHASVMREKNTGKPRGFGFVVFADPSILDRVLEEKHVIDGRTVDAKKAFSREDQQISATSRAGNPNSYRNSGNGGNMRTKKIFVGGLPPTLSEEKFREYFEAYGHVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLQKPFHDLNGKQVEVKRALPKDANPGASGRMGTGGGGGSGYQGYGASGGNQNAYDGRMDSGRYVQPPSTGGGFPPYGSSGYGASGYGYGPANNGMGFAGYGSYGGASTGYGGPAGATYGNPGIPNAAYASGPPGAPRSSWPAQAPSGYGSMGYGNAAAWGATGGSAGSGGTGGPGSAPAGQSPSGAAGYGNQGYGYGGYGGYGGSDSPYGNPGVYGAVGGRSGSAPNSYAGGPGGNEPQGSGGNYNGSGYGDANGSSGYGNAAWRSEAAQQSGNYGTPQLNGPHGGQVGYGSNYGGAQSRQAQQQ | 474 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5021g00008 | 474 | CDD | RRM2_Hrp1p | 113 | 190 | - | - | |
| Pral5021g00008 | 474 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
| Pral5021g00008 | 474 | SUPERFAMILY | RNA-binding domain, RBD | 111 | 219 | IPR035979 | GO:0003676 | |
| Pral5021g00008 | 474 | MobiDBLite | consensus disorder prediction | 333 | 353 | - | - | |
| Pral5021g00008 | 474 | MobiDBLite | consensus disorder prediction | 81 | 112 | - | - | |
| Pral5021g00008 | 474 | MobiDBLite | consensus disorder prediction | 84 | 109 | - | - | |
| Pral5021g00008 | 474 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 107 | 226 | - | - | |
| Pral5021g00008 | 474 | Gene3D | - | 4 | 88 | IPR012677 | - | |
| Pral5021g00008 | 474 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 | 1 | 474 | - | - | |
| Pral5021g00008 | 474 | MobiDBLite | consensus disorder prediction | 392 | 474 | - | - | |
| Pral5021g00008 | 474 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 73 | IPR000504 | GO:0003723 | |
| Pral5021g00008 | 474 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 181 | IPR000504 | GO:0003723 | |
| Pral5021g00008 | 474 | MobiDBLite | consensus disorder prediction | 186 | 221 | - | - | |
| Pral5021g00008 | 474 | SMART | rrm1_1 | 113 | 185 | IPR000504 | GO:0003723 | |
| Pral5021g00008 | 474 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
| Pral5021g00008 | 474 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
| Pral5021g00008 | 474 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 110 | IPR035979 | GO:0003676 | |
| Pral5021g00008 | 474 | MobiDBLite | consensus disorder prediction | 408 | 450 | - | - | |
| Pral5021g00008 | 474 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 189 | IPR000504 | GO:0003723 | |
| Pral5021g00008 | 474 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
| Pral5021g00008 | 474 | Gene3D | - | 107 | 229 | IPR012677 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5021g00008 | Pral-Chr5021 | 40641 | 43478 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5021g00008 | 8 | 200 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 25.628 | 8.33e-10 | 59.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5021g00008 | K14411 | - | gmx:100811267 | 591.267 |