Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5020g00009 ATGGCAGCTTCTGCAGCGGCGGCTATAGGCTCCTCATTCTCTTCCTCCATCAACACTCTCAAGTGCCTTCGTTCATCCAAGAACTTGCCCTCTGAACCCCTTCTAAGAATTTCATCAAACCGCGTGTTAGCGTCGGTGTCACTATCGCACTTGGTGGAACCACTTTCCTTTGATACCAATGTCAACAAGTTGTGGGTTTCAAGGGTTTCGACACAAGAAGAGCTTGTAGTGGTTGATGAGATTGATGCTGGTTTAGTTGAAGAGAACAAGGAGGGAGAAGAGGAAGTGGTAGAGGAAGGAGAGGCTGAAGAAGGCTCTGTCAACACGAAGCTTTATTTTGGAAACTTGCCTTACAGTGTTGATAGTGCACAACTTGCAGCGATTATTCAGGATTATGGTAGCCCAGAACTCATTGAGGTTCTTTACAACAGAGAGACTGGAAAAAGCAGAGGTTTTGCATTTGTTACAATGAGCAGTGTCGAAGATTGCAATGCAGTGATAGAAAACCTTGATGGAACTGAATTCCTGGGTCGAAGCCTGCGAGTGAACTTCTCTGACAAACCTAAACCAAAACTGCCCTTGTATCCTGAAACTGAACACAAGCTTTTTGTTGGGAACTTGTCATGGTCTGTAACTTCTGAGAGTCTGACTCAAGCTTTCCAAGAATATGGACGTGTGGTTGGAGCTAGGGTCTTATATGATGGGGAAACAGGAAGATCCCGTGGTTATGGCTTTGTTTGCTATTCAACCAGATCAGAAATGGAAGCCGCCCTTTCATCCATGAATGGAGTGGAACTGGAAGGACGGGAAATGCGTGTAAGCTTGGCTGAAGGGAAACGATCACAAAGTCAATAG 855 0.4538 MAASAAAAIGSSFSSSINTLKCLRSSKNLPSEPLLRISSNRVLASVSLSHLVEPLSFDTNVNKLWVSRVSTQEELVVVDEIDAGLVEENKEGEEEVVEEGEAEEGSVNTKLYFGNLPYSVDSAQLAAIIQDYGSPELIEVLYNRETGKSRGFAFVTMSSVEDCNAVIENLDGTEFLGRSLRVNFSDKPKPKLPLYPETEHKLFVGNLSWSVTSESLTQAFQEYGRVVGARVLYDGETGRSRGYGFVCYSTRSEMEAALSSMNGVELEGREMRVSLAEGKRSQSQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5020g00009 284 SUPERFAMILY RNA-binding domain, RBD 108 191 IPR035979 GO:0003676
Pral5020g00009 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Pral5020g00009 284 CDD RRM2_NsCP33_like 201 276 - -
Pral5020g00009 284 FunFam 28 kDa ribonucleoprotein, chloroplastic 191 282 - -
Pral5020g00009 284 Gene3D - 78 190 IPR012677 -
Pral5020g00009 284 Gene3D - 191 284 IPR012677 -
Pral5020g00009 284 PANTHER OS02G0815200 PROTEIN 40 280 - -
Pral5020g00009 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Pral5020g00009 284 SMART rrm1_1 110 183 IPR000504 GO:0003723
Pral5020g00009 284 SMART rrm1_1 201 274 IPR000504 GO:0003723
Pral5020g00009 284 SUPERFAMILY RNA-binding domain, RBD 193 281 IPR035979 GO:0003676
Pral5020g00009 284 FunFam 31 kDa ribonucleoprotein, chloroplastic 71 190 - -
Pral5020g00009 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Pral5020g00009 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 272 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5020g00009 Pral-Chr5020 52962 55371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5020g00009 109 279 Eukaryotic Initiation Factors Gene Family AT3G16380 31.915 2.05e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5020g00009 - - cave:132178760 397.127