Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5017g00001 ATGGGGGTGGGGGGACATTTCTGGGATTTGCTAAAGCCATATGCACGAGCCGAAGGTTTTGATTTCTTGAGGGACAAGCGAGTCGCTGTGGACCTCTCCTTCTGGATTATCCAGCATCAGACTGCTATTAAGGCCCATGCTCGGAAACCTCATCTACGACTTACCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATATCCAGTCTTTGTGGCAGATGGGACCCCTTCGCCGTTGAAATCACATGCTAGGATTTCAAGATTTTTCCGTTTTTCTGGCATTGAACTAAAAGATTTTCCGGTGGATGAAGACAGTGTTCCCGTTGAGAGGAACCGTGAATTTTCAAGGCATGTTCAGGAATGTCTCGAACTTGTGGAGTTACTTGGAATGCCTGTACTATATGCTAAAGGAGAGGCAGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTTACGTAGATGCTTGCATCACATCTGACAGTGATGCATTCCTATATGGTGCGAAATGCGTTATAAAAAGCTTCTGCTCTAATGCCAAAGAAGCTTTTGAATGCTACAATATCGAAGATATTGAAGCTGGCCTTGGGTTGAAGAGGAGACACCTCATAGTCTCTCTTCTCGTTGGAAATGATTATGATTTAAATGGTGTTCGGGGGATTGGGCTTGATACGGCTCTTCGTTTTGTTAGATGTTTCGGTGAAGAAGATGTGTTGAATAGATTGCAAGATATTGGCAATGGGAAAGTTTCGTCAGCTCCCACCAACATTAAATCTGCTGAAAATTGTGTTGACATGGAGGGGAACTTTCCAAGCCGAAAACAGCTTCATTGTTCCTTTTGTGGGCATCCGGGCAGCAAAAGAGATCATATGAAATCTTCTTGTGAATTTTGCATAACAAGTGATGATGAAGGTTGCTTGAGAAAACCAGAGGGTTTTACCTGTGGTTGCCCTTCCTGTGATATGGTTAGTAAACGAAAGGGGCAGAGAAGGAGGGAAAATTGGTACACAAAAATTTGTCTCAAAATTGCACAAGAGCTCAAATTTCCCAGAGACGAAATAATTGAAATGTATTTATGTAAAGACAGTGGTTGCCTTCCTGCAAGTGATGATCCTTGCATCTCATGGGGCAAACCCAAGATTGAGATGCTGATAGATTTTTTAAACTTTCATCAGCATTGGGATCCATCTTACATTCGACGACAGCTATTTCCTATGATGTCTACTATCTTTTTGAGAGACATGGCTAATGCTCCTGTAGAAAGTTTGGTACTTGGGACATTCGAGCTTGATTCAATACAGCGTGTGAAGATAAGATATGGATATCAATCTTATGTTGTCAAGTGGAAATGTGCAGTTGGCAACGTTAGCTGTACAGTTCCATCTCATGACTCTAGCATGCAGCAAGCAGATGGTAGTGAGCATGATGAATTTGTGGATCTACTAGATGATTCTAGTATTTCTGATATGGGTGATGGGTGTAGCTTCCTGCTGACAGATGAAAATATGGATCTTGTGAGGGCTGCTTTTCCAGCAAAAGTTGAAAGGTTTTGGCAAGAGCAGGAACTGAAGGGATCAAAAATAAGAAAGGCTTCTACCCCACGATCTCTAGAGAAGGAGAGTTCATCATTAAAAACAAGTAGTATTCAACAAAGCATTACAAAGTTCTACCGCTCAGTGAAAACGCAAGATCATTCAAACAGGAAGCTGCATCTGATAGCTTTGATGACCTTGACTGTGGGACCTTAA 1749 0.422 MGVGGHFWDLLKPYARAEGFDFLRDKRVAVDLSFWIIQHQTAIKAHARKPHLRLTFFRTINLFSKFGAYPVFVADGTPSPLKSHARISRFFRFSGIELKDFPVDEDSVPVERNREFSRHVQECLELVELLGMPVLYAKGEAEALCAQLNSEGYVDACITSDSDAFLYGAKCVIKSFCSNAKEAFECYNIEDIEAGLGLKRRHLIVSLLVGNDYDLNGVRGIGLDTALRFVRCFGEEDVLNRLQDIGNGKVSSAPTNIKSAENCVDMEGNFPSRKQLHCSFCGHPGSKRDHMKSSCEFCITSDDEGCLRKPEGFTCGCPSCDMVSKRKGQRRRENWYTKICLKIAQELKFPRDEIIEMYLCKDSGCLPASDDPCISWGKPKIEMLIDFLNFHQHWDPSYIRRQLFPMMSTIFLRDMANAPVESLVLGTFELDSIQRVKIRYGYQSYVVKWKCAVGNVSCTVPSHDSSMQQADGSEHDEFVDLLDDSSISDMGDGCSFLLTDENMDLVRAAFPAKVERFWQEQELKGSKIRKASTPRSLEKESSSLKTSSIQQSITKFYRSVKTQDHSNRKLHLIALMTLTVGP 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5017g00001 582 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 205 414 IPR036279 -
Pral5017g00001 582 SUPERFAMILY PIN domain-like 6 212 IPR029060 -
Pral5017g00001 582 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Pral5017g00001 582 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Pral5017g00001 582 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Pral5017g00001 582 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Pral5017g00001 582 Pfam XPG I-region 131 212 IPR006086 GO:0004518
Pral5017g00001 582 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 543 IPR006084 -
Pral5017g00001 582 FunFam Flap endonuclease GEN-like 1 198 255 - -
Pral5017g00001 582 FunFam Flap endonuclease GEN-like 1 2 197 - -
Pral5017g00001 582 CDD PIN_GEN1 2 209 - -
Pral5017g00001 582 Gene3D - 199 262 - -
Pral5017g00001 582 SMART xpgn3 1 96 IPR006085 GO:0004518
Pral5017g00001 582 SMART xpgineu 128 198 IPR006086 GO:0004518
Pral5017g00001 582 Gene3D - 2 197 - -
Pral5017g00001 582 Pfam XPG N-terminal domain 1 86 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5017g00001 Pral-Chr5017 2379 7251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5017g00001 1 330 Core DNA Replication Machinery Family AT5G26680 25.135 1.18e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5017g00001 K15338 - gmx:100791251 763.066