Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5014g00006 ATGGAAAAGCAAAGTGTTCTGTGTGATGTTTCTTCAACATGGGAAGGTTCAGAAAATGAACACTCCATGGAGAAGAGGTTGAAGCTATTTGGGTTTGAGTTAAATCCATGTAGCAACAAAATTACCAGTTCAAATGAAGGAGACGAAAGTGTGAACTCTTCAACCTCAATTCTGTCTTCTTCTTCATCAGGATCAGAAAGAGCAGACAGATCTGAAGCAGGTCAAGATCAGAAGATCGTTATCGTCACAGAATCATCTTCAAGAGATGAAAAACCTAATAATAATGATAATAATAATAAGATTTCTTCTTCCTCAGATGAGCAGAGAAAGTTCGAGTGCCAATACTGCTTCAAGGAGTTTGCAAACTCACAGGCTTTAGGAGGCCATCAAAATGCTCATAAGAAAGAAAGAATGAAGAAGAAGAGACTTCAGCTTCAAGCCAGGAAGGCTAGCTTCAACTTATATCATCTTCAACAACGATCTTTTCAAGCCAGTAATAATTATTATTATCAGTATTATGGATCTGGATCTGATAATAGTAATAATTATAATTCTTCTTCTTGGTTCTACGATCCTTCTTCGTATAACAACTCAGCCGAGTTGTTCAATCTTCATGAAGGATCCCAGATTAGCTTCAGATCTTCATCAAATCCTCATCATCATCCTCGTCGTTCTCTTCAGGAGCCTTCTCGTATGTTTGATTTCTCTCGCACTGATAGGCCTTTCATGTTGGAGACTTCGACCCAGAAAACGAATCATTCTCAGAAAGCTTTGGATCTTCAACTAGGCTTAGCCTTGGAGTCGAATACAAGAATCTAA 819 0.3822 MEKQSVLCDVSSTWEGSENEHSMEKRLKLFGFELNPCSNKITSSNEGDESVNSSTSILSSSSSGSERADRSEAGQDQKIVIVTESSSRDEKPNNNDNNNKISSSSDEQRKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASFNLYHLQQRSFQASNNYYYQYYGSGSDNSNNYNSSSWFYDPSSYNNSAELFNLHEGSQISFRSSSNPHHHPRRSLQEPSRMFDFSRTDRPFMLETSTQKTNHSQKALDLQLGLALESNTRI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5014g00006 272 MobiDBLite consensus disorder prediction 1 21 - -
Pral5014g00006 272 SUPERFAMILY beta-beta-alpha zinc fingers 108 138 IPR036236 -
Pral5014g00006 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Pral5014g00006 272 MobiDBLite consensus disorder prediction 1 17 - -
Pral5014g00006 272 Gene3D Classic Zinc Finger 83 166 - -
Pral5014g00006 272 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Pral5014g00006 272 PANTHER ZINC FINGER PROTEIN 5 14 267 IPR044299 GO:0010090
Pral5014g00006 272 MobiDBLite consensus disorder prediction 211 230 - -
Pral5014g00006 272 MobiDBLite consensus disorder prediction 41 68 - -
Pral5014g00006 272 MobiDBLite consensus disorder prediction 41 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5014g00006 Pral-Chr5014 152220 153227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5014g00006 84 168 C2H2 Transcription Factor Family AT5G06650 49.412 1.61e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5014g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5014g00006 - - adu:107488933 170.244