LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5008g00012	ATGGAGTTTCTAGTGGCAGTCGGGACAGGAATTGTGTCAAAACTTGGGGAGATGTTAATGGATCCCGTCACATCGCAATTCAAACATCTGATTCACTATGAGAAAAATATCAATAAAATGAAGAATGAACTCAACAATTTGAAAGACAGGAAGGGTGCGATTGAAGGAATGGTGGACGCAGACAGAAGGAATGGACGTCACGTTGCTCCAAATGTTGAACACTGGCTCTACCAAGTGGACAACGTTGTAGAAAATGAATTACATAAAGTGTACGATGATGAGTTAGTCAACAAGAACAAGAAATGCCTCAACGGGTTGTGTCCAAATTTGGTGTTTCGTTATTCACTGAGCAAGAAAGCAGGAAAAATGGTGCAAGATCTTGTTTCCCTGAAGGAGCAAAAATTTGAGTTCATATCCTACCCCGCACCTTTGCCAACACTAGGATCCACTTTCACAGAAGGAATTAAGAGCTTTGCCTCAAGAGACTCAATTATGACCGAGGTTGTAGAGAAATTGAAGGGTGATGAGCTCCACAAGGTAAGCCTCTGTGGTATGGGTGGTGTCGGGAAAACCACATTGGTGAAAGAGCTTATCAAAATTTTAGAAGCAGATAAGGTGTTTGATGAAATTTCAATGGCTATCGTGTCCCAAGTTCCTGACTATAGAAAGATTCAAGGTCAAATTGGTGACACCTTAGGCTTGAAACTTGATAAGGAAACTTTGCAAGGAAGGGCAAGTCAACTACTTGAGAGGCTTAACAAGATCAATAAGGTCCTCGTAGTGCTGGATGATGTATGGACAGAGCTGGATTTCGAGTTGATAGGGCTTCCTTCAAATGGGCATTGTCACAAGGGCTGCAAAGTTTTATTCACATCAAGAAATGAAGATGTGTGCCATAGGATGAGAAGTCAGAGGAACTTCACTATCCCCGTTCTTTCTAAAGAAGAAGCATGGGATCTCTTCAGAGATACAGTAGGCGGTCATGTTGTGGACAAAGCTGAGATCCATAACATAGCAAAAGAGGTTGCAAATGAATGTAGGGGCTTGCCAATTGCTATTGTCACAATAGCAAAAGCACTAGGGAACAAAGAGAAGCATGTATGGGAGGATGCACTTGATCAGCTGAGAAAGTCTTCACTAACTTCCTTCTCAGAGATGCAAGAATATTCTATATATTCATGTATTGAATTAAGCTATAACTTTCTAGCCAATGAAGAAGCTAAATTTCTCCTTTTGCTTTGTTGCTTATTCCCAGAAGACTTTGACATTCCCATTGAAGTTTTACTCAGATATGGAGTCGGCTTAGGTTTGTTCAAGGATCTGGGTGCTTTGTGTAAAGCAAGGAATCGAGTGCATACCTTGGTTGATACTCTAAAGAAGCGGTTTTTGTTGCTGGACAGCAATGAGGAAGAGTGTGTGAAAATGCATGATGTCGTTCGTGATACTGTCATAACAATTGGATCCAGAGAAGAGCATGGATTTGCAGTGAAATATGATGCTGGACAGGTAGGGTCAAAGGAGTTCACATGGCATCATAGTGCAATCTCACTTGTGTTTGATGAGATTAAGACGCATCCTAAGAGTTTGCAGTGTCCAAATCTTAGACTCTTACAAATTTTTTTAAAGAGAAGAGAGCCCATTTCAGAAAATTTCTTCCATAACATGAGCAACCTAATGGTTTTAGGCATAAGCAATCTGTGCATTCCATTAATGTTATCTCCATTCCGATCACTCAACAACCTGTGCACCTTACGGTTGGAAGATTGTCAGGTTGGAGACATATCGGTAATATGTAAGGAGCTAAGGAAACTGGAAGTGTTGAGCTTTGCCCACTCAAATATCAAAGAATTGCCAGCAGAAATAGGCAAACTAAGCCTTCTAAGACTGTTGGATTTGACAGAATGCAATGAACTTGAACAGATGTCTTCTGGGGTCCTAGCTAGCTTATCTAACTTAGAAGAACTTTATCTTAGAGTCAGGAATTTCCATTTGGAGGAAAAGAATTCCATTCTTGCAGAGCTCAAATCTCTTTCTCATCAGCTAAAAGTTCTTGAGATTTCACTAACAGGAATTCATATTTTTCCTAAAGATTTGGAGTTCAAAAACTTGGTTAAGTTCTGGATCTATGTGAGAGACCCAACTACTCTTTCCCATGGCTTTGTTCGTCGGGGTTATCTATACCCTAACATCCTTAAAGTAAACAGTGTGTACCATAAGGACATTAAAGAGAATGTGGCAATTCAACAGTTGCTTAAGAAATCTGAAATTCTCAACCTTGTGAATGTAAAACAATTAGAAAACGTGCTCTATGAGTTGGATGAAGAAGGTTTTCCGCACTTGAAAAATCTCAGCATTGAATTCTGCAATGATCTGAAGTATTTAACAGATGAAACTGTCTATGCTTCAAGTTGTGTCTTCCCACTGGTTCAGTCATTGTCTCTGCACAATTTGGACAATTTAAGAGAGATATGCCATGCCAAGAGTTTCACCTCTACTTGCCAATGCTTTGGCAGCTTGAGTGATTTGAGAGTAGAATTCTGCAACAAGTTGAAGTATGTCTTTTCACCATTTCAGGGGTCAAGTGTTGGGATGCTTCAACGCTTGCATGTGACTGAATGCTATGTGATTGAATGTATTGTCTGCAGAGAAATCCATGACGAGAATTCAGTGATCATGTTCACAAATTTACTGGAACTGAAGCTTCAAGAACTCCCAAGACTGGTTGGGTTCACTATGCCGGATCATAAGAATGAGCTTCACGTATTAAAGGCCCAGGTTCAAGAAAAACAGAAGCTTGATGACGGCCCACATCTGCCAGGGTCCCATTCGACATTAGGAGATGATGGATCTGTTCAGATTGGTGGTGCACTATTTGAATCCATGTGGACGCCCCTTTTCCCAAAATTGGAGAAAATCTTATTACTTGAGTGCTCTTTGTTAGATACAGTCTTTGACTTGAAACAGTTAGAAATCAAAGGCCAGCCAGTTCCTATGTTATTTTCTCAACTCAAAGAAATAGAGATATCTTGGCTTAGCAAGCTAAGACATATTTGGAGAAACGTTCCAAGTTATATTCAGGGCTTTCAAAACTTGAGATCACTCAAAGTCAAGAAATGTGATGCTTTAAGAAGTATCTTTATTCCAACCATTGCCAGAACACTCACAGAGCTTCAGAAGCTGGTGATACACAGTTGCCAGTTGATGGAGAAAATTGTTGGAGATGATGATGGAGGGGAACCAGAGAAAGTGGAAACTCTATTGTTTGCCAAGTTAGATTCTTTGACACTCAAGGACCTCCCAAACCTTGTGAGAATTTGCCCAGATTTTTATGAGCTAACCTGGCCATCTCTGAGATATTTATGCATCGAAGGGTGTCCCCAGCTGAAGACATCTTCAATGCCAATTCAAAACCTGGCAAAGCAAGAGAATCTCAACAACTTTTCAGATTCTACTCTCCAGGATGTTGGTTTCAGCACTCCCAGGTTTCTCCCTTGTTGCCTTGGATGCACTCCATCAAATATTGAGATTTCCAACTCAATGGCCAGATCAAATTTCCAAAGATCAGGAAAGATCAGCAACCAGGCTAGTTTGACCAGAGACCATATCTCTTCTGATGTCAAAGAAATATATGCTAGAGAAGAAATGAGGTCCTACATGCCAAATCTGGAACAACTTCAAGTCAAAGGCTGGGATTCATTAGATGTCATATTCCAGCTTGAACAAAACCAGCATCCCAATGCTAGTGCAAACTGTATAGTAAAACTGGTGCCCATGTTGACAAGTCCAGTGGAAATCACCGGCTTCAACAACCTCACGCTGCTAAGTTTAGAAGCTTGTCAGAATTTAAGATATCTGTTCTCTCATTCCATAGCAAGGCTTCTTGTGAAATTGCAAGATGTGAAGGTATCAAACTGTAGGATGGTGGAGCAACTGGTCAAAAGCGAAGATGGCTCAGTTGTATCTTCTTCTGCAAACTCTCTTGAAGTTTTTGAGAATGCATTACCAAATCATGCAACATCCCTCTCCAAAGATTCATTTGTCTTAGAGTTTCCATCCCTGAAGAGAATCACCGTTATTAACTGCAGCGTGCTAGAAGTTATCATCAAGAATGGAGAGTGGACAACAGACCTGACTTCATTTGATCATGTTCAGTCTCTTACTTTAAGCCATCTGCCAAATCTTGTGAGCTTCTGCAACCAACCTCATATTCGTGAGCAATGGAAATACAGAGGCAACGGCCGTCATCAACAAGATTTGGCAGATCAGGTAGCAAATGGCTAA	4281	0.4064	MEFLVAVGTGIVSKLGEMLMDPVTSQFKHLIHYEKNINKMKNELNNLKDRKGAIEGMVDADRRNGRHVAPNVEHWLYQVDNVVENELHKVYDDELVNKNKKCLNGLCPNLVFRYSLSKKAGKMVQDLVSLKEQKFEFISYPAPLPTLGSTFTEGIKSFASRDSIMTEVVEKLKGDELHKVSLCGMGGVGKTTLVKELIKILEADKVFDEISMAIVSQVPDYRKIQGQIGDTLGLKLDKETLQGRASQLLERLNKINKVLVVLDDVWTELDFELIGLPSNGHCHKGCKVLFTSRNEDVCHRMRSQRNFTIPVLSKEEAWDLFRDTVGGHVVDKAEIHNIAKEVANECRGLPIAIVTIAKALGNKEKHVWEDALDQLRKSSLTSFSEMQEYSIYSCIELSYNFLANEEAKFLLLLCCLFPEDFDIPIEVLLRYGVGLGLFKDLGALCKARNRVHTLVDTLKKRFLLLDSNEEECVKMHDVVRDTVITIGSREEHGFAVKYDAGQVGSKEFTWHHSAISLVFDEIKTHPKSLQCPNLRLLQIFLKRREPISENFFHNMSNLMVLGISNLCIPLMLSPFRSLNNLCTLRLEDCQVGDISVICKELRKLEVLSFAHSNIKELPAEIGKLSLLRLLDLTECNELEQMSSGVLASLSNLEELYLRVRNFHLEEKNSILAELKSLSHQLKVLEISLTGIHIFPKDLEFKNLVKFWIYVRDPTTLSHGFVRRGYLYPNILKVNSVYHKDIKENVAIQQLLKKSEILNLVNVKQLENVLYELDEEGFPHLKNLSIEFCNDLKYLTDETVYASSCVFPLVQSLSLHNLDNLREICHAKSFTSTCQCFGSLSDLRVEFCNKLKYVFSPFQGSSVGMLQRLHVTECYVIECIVCREIHDENSVIMFTNLLELKLQELPRLVGFTMPDHKNELHVLKAQVQEKQKLDDGPHLPGSHSTLGDDGSVQIGGALFESMWTPLFPKLEKILLLECSLLDTVFDLKQLEIKGQPVPMLFSQLKEIEISWLSKLRHIWRNVPSYIQGFQNLRSLKVKKCDALRSIFIPTIARTLTELQKLVIHSCQLMEKIVGDDDGGEPEKVETLLFAKLDSLTLKDLPNLVRICPDFYELTWPSLRYLCIEGCPQLKTSSMPIQNLAKQENLNNFSDSTLQDVGFSTPRFLPCCLGCTPSNIEISNSMARSNFQRSGKISNQASLTRDHISSDVKEIYAREEMRSYMPNLEQLQVKGWDSLDVIFQLEQNQHPNASANCIVKLVPMLTSPVEITGFNNLTLLSLEACQNLRYLFSHSIARLLVKLQDVKVSNCRMVEQLVKSEDGSVVSSSANSLEVFENALPNHATSLSKDSFVLEFPSLKRITVINCSVLEVIIKNGEWTTDLTSFDHVQSLTLSHLPNLVSFCNQPHIREQWKYRGNGRHQQDLADQVANG	1426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5008g00012	1426	Gene3D	Ribonuclease Inhibitor	949	1152	IPR032675	-
	Pral5008g00012	1426	Pfam	NB-ARC domain	163	400	IPR002182	GO:0043531
	Pral5008g00012	1426	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	156	413	IPR027417	-
	Pral5008g00012	1426	Coils	Coil	238	258	-	-
	Pral5008g00012	1426	Gene3D	-	398	485	IPR036388	-
	Pral5008g00012	1426	PRINTS	Disease resistance protein signature	252	266	-	-
	Pral5008g00012	1426	PRINTS	Disease resistance protein signature	346	360	-	-
	Pral5008g00012	1426	PRINTS	Disease resistance protein signature	179	194	-	-
	Pral5008g00012	1426	PRINTS	Disease resistance protein signature	622	638	-	-
	Pral5008g00012	1426	SUPERFAMILY	L domain-like	956	1398	-	-
	Pral5008g00012	1426	Coils	Coil	30	57	-	-
	Pral5008g00012	1426	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	940	1132	-	-
	Pral5008g00012	1426	Gene3D	Ribonuclease Inhibitor	512	932	IPR032675	-
	Pral5008g00012	1426	SMART	AAA_5	176	322	IPR003593	GO:0016887
	Pral5008g00012	1426	Gene3D	-	148	309	IPR027417	-
	Pral5008g00012	1426	SUPERFAMILY	L domain-like	474	882	-	-
	Pral5008g00012	1426	Gene3D	Ribonuclease Inhibitor	1191	1410	IPR032675	-
	Pral5008g00012	1426	FunFam	Probable disease resistance protein At1g61300	149	306	-	-
	Pral5008g00012	1426	Gene3D	-	311	397	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5008g00012	Pral-Chr5008	113887	119128	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5008g00012	180	490	WRKY Transcription Factor Family	AT5G45050	27.660	8.32e-11	65.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5008g00012	-		-	vra:106757704	1408.66