Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5007g00005 ATGGAGGAAATGTACGGGTTCTCATCGTCCCCCATGGATTACTCCGACAAAGCCATCATGTCTCCGGAGAATCTGATTTTCCCCGCCGACTACCAGAGCTTCCTCATGTCTTCCTCCGCCGCACAACCTGGCTTCCGTGATCGGTTTCCCGTTTTAGGATCCGACGAGTTGCTTTCTGCTGCCTCTACCGAAGTCGAAGCCTCCGTCGCTGCTCCTGAATTTCGGCCACAAGAGGACGATTCTTTCTCCATCATCAAAGCCAAAATCGCATCTCATCCTCACTATCCTCGTCTCATTCAAGCTTACATCGATTGCCAGCAGGTTGGAGCACCTCCAGAAATAGCATGTTTGTTGGACGAAATCCGGCGAGAAAACGACCTTAGCAGGAGGGACGTTGTTTCCACGTGCTTTGGAGACGACCCCGAGCTTGACGAGTTCATGGAAACCTACTGCGACGTGCTGGTTAAGTATAAATCTGATCTTGCTCGGCCTTTTGATGAAGCAACTTCCTTCCTCAACAAGATCGAAACCCAGCTCAGCGATCTCTGTAGTGTTGCTTCCGTTCTAAGCCTTTCCGATGATGGGGGTGTGTCTTCGGAAGAAGATTTCAGTACTGAAGGTGGAGACGCTCAGGATGATGGTCAAGCCAAGGATGAAGACCAAGAGCTTAGGGATAGGCTTTTACGTAAGTTTGGGAATCGTATTGGCTCTTTGAAGTTGGAGTTCTCAAAGAAGAAGAAGAAGGGTAAGCTGCCAAAAGAAGCCAGGCAAACACTGCTTGAGTGGTGGAATGTTCACTACAAATGGCCATACCCAACGGAGTCTGACAAGATTGCTCTGGCCAAGTCAACGGGTCTAGACCATAAGCAAATAAACAATTGGTTTATTAATCAGAGAAAGCGCCACTGGAAGCCATCTGAAAACATGAGCTCGCAATTTTCTGCCATGGATAATCTTACTGGACGTTTCTTACCTGACGAATAA 984 0.4827 MEEMYGFSSSPMDYSDKAIMSPENLIFPADYQSFLMSSSAAQPGFRDRFPVLGSDELLSAASTEVEASVAAPEFRPQEDDSFSIIKAKIASHPHYPRLIQAYIDCQQVGAPPEIACLLDEIRRENDLSRRDVVSTCFGDDPELDEFMETYCDVLVKYKSDLARPFDEATSFLNKIETQLSDLCSVASVLSLSDDGGVSSEEDFSTEGGDAQDDGQAKDEDQELRDRLLRKFGNRIGSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTESDKIALAKSTGLDHKQINNWFINQRKRHWKPSENMSSQFSAMDNLTGRFLPDE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5007g00005 327 ProSitePatterns 'Homeobox' domain signature. 280 303 IPR017970 GO:0000981|GO:0006355
Pral5007g00005 327 Pfam ELK domain 222 243 IPR005539 GO:0003677
Pral5007g00005 327 Pfam Homeobox KN domain 262 301 IPR008422 GO:0003677|GO:0006355
Pral5007g00005 327 MobiDBLite consensus disorder prediction 193 219 - -
Pral5007g00005 327 Pfam KNOX1 domain 85 126 IPR005540 GO:0003677|GO:0005634
Pral5007g00005 327 SMART ELK_2 222 243 IPR005539 GO:0003677
Pral5007g00005 327 SMART KNOX2_2 133 184 IPR005541 GO:0003677|GO:0005634
Pral5007g00005 327 SMART KNOX1_2 83 127 IPR005540 GO:0003677|GO:0005634
Pral5007g00005 327 FunFam Homeobox protein knotted-1-like 2 247 309 - -
Pral5007g00005 327 ProSiteProfiles ELK domain profile. 222 242 IPR005539 GO:0003677
Pral5007g00005 327 ProSiteProfiles 'Homeobox' domain profile. 242 305 IPR001356 GO:0003677
Pral5007g00005 327 SUPERFAMILY Homeodomain-like 243 314 IPR009057 -
Pral5007g00005 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 62 312 - -
Pral5007g00005 327 Pfam KNOX2 domain 137 183 IPR005541 GO:0003677|GO:0005634
Pral5007g00005 327 CDD homeodomain 254 306 IPR001356 GO:0003677
Pral5007g00005 327 Gene3D - 241 316 - -
Pral5007g00005 327 SMART HOX_1 244 309 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5007g00005 Pral-Chr5007 125146 133619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5007g00005 1 327 Homeobox Transcription Factor Family AT1G23380 64.583 1.58e-143 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral5007g00005 KNOX2 4.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5007g00005 - - gmx:100803730 440.654