Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5005g00038 ATGCAGGTCAAAATCTTTGGGATACGAGGTTGCTGTTTTGGCATTGCTAACATGATTTTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTACTTCTTCAGGATATATCGTTTTATGACTCTGAAACGGTTGGCGATTTGACAAGCAGGCTTGGGGCAGATTGTCAACAAGTGTCACGTGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTTCTTCAGGGAGCAGGTGCATTGATCTACCTGCTGGTTTTGTCTTGGCCGCTTGGATTATGTACACTGGGTATATGCACTATATTATCAGCAGTTATGCTAATTTATGGAAGGTATCAGAAAAAAGCTGCAAGGTTGATCCAAGAAGTTACTGCCTCTGCAAATCAGGTAGCGCAGGAAACATTTTCTCTCATCAGGACTGTCCGTGTTTATGGAACTGAAGGAGAAGAACTTGGAAGATACAAATGGTGGCTGGGGAAGTTAGCTGATATAAGTTTGCGACAAAGTGCTGCTTATGGATTTTGGAATTTAAGTTTCAACACACTATATCATTCAACTCAGGCTATCGCCGTTCTGTTTGGAGGGATGTCCATTCTAGCAGGTCATATTACAGCAGAGAAACTCACCAAGTTTATACTATACAGTGAATGGCTCATTTATTCAACCTGGTGGGTTGGAGACAATATATCCTCTTTGATGCAATCAGTTGGAGCCAGTGAAAAAGTATTTCAATTGATGGATCTCTTACCAAGCAGCCAATTCATAGCAAGGGGGGTAAAGTTACAGAGATTAGCGGGGCTTATTGAGTTTATAGATGTTGCTTTTCACTACCCTTCAAGGCCAACAGTGCCTGTAGTGCAAGATGTAAGCTTTTCTGTTCATCCTGGTGAGGTGGTTGCAATTGTTGGCCTTAGTGGTAGTGGAAAAAGCACACTCGTAAACCTTTTGCTCCGGCTATATGAGCCAACAAATGGTCAGATTTTGATTGATGGCTACCCTCTTAAAGAACTGGACATCACGTGGTGGAGAGAGAGAATTGGATATGTGGGACAGGAGCCAAAGCTCTTTCGCATGGATATTGGTTCAAACATCAGATATGGATGCACCCATGATATAAAACAAGAGGATGTTGAATGGGCTGCCAAACAAGCCTATGCTCATGACTTCATCTCAGCACTTCCTAATGGTTATGTGACACTTGTTGATGATGATCTATTAAGTGGGGGACAAAGGCAGCGAATCGCCATTGCAAGGGCCATTGTTAGGGACCCAACTATTTTGCTCCTTGATGAAGCTACCAGTGCACTGGATGCTGAGAGTGAATATAATGTCCAGGGTGTCTTTCGATCCATCAGAAGTGACTCCACGATGAGAAGCGTCATAGTCATTGCACACAGGCTTTCTACCATAAAAGCGGCTGACAGGATTGTGGTCATGGATGGTGGTCGGGTTGTTGAGATTGGGAATCACAGGGAACTTCTCTTAAAGGATGGTTTGTATGCACGATTGACTAGAAAACAGGCTGACGCAATGTCATGA 1539 0.4288 MQVKIFGIRGCCFGIANMILVKRMRETLYSSLLLQDISFYDSETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGAGALIYLLVLSWPLGLCTLGICTILSAVMLIYGRYQKKAARLIQEVTASANQVAQETFSLIRTVRVYGTEGEELGRYKWWLGKLADISLRQSAAYGFWNLSFNTLYHSTQAIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISSLMQSVGASEKVFQLMDLLPSSQFIARGVKLQRLAGLIEFIDVAFHYPSRPTVPVVQDVSFSVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGYPLKELDITWWRERIGYVGQEPKLFRMDIGSNIRYGCTHDIKQEDVEWAAKQAYAHDFISALPNGYVTLVDDDLLSGGQRQRIAIARAIVRDPTILLLDEATSALDAESEYNVQGVFRSIRSDSTMRSVIVIAHRLSTIKAADRIVVMDGGRVVEIGNHRELLLKDGLYARLTRKQADAMS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5005g00038 512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 268 506 IPR003439 GO:0005524
Pral5005g00038 512 FunFam Multidrug ABC transporter ATP-binding protein 260 511 - -
Pral5005g00038 512 Pfam ABC transporter 287 434 IPR003439 GO:0005524
Pral5005g00038 512 Gene3D ABC transporter type 1, transmembrane domain 11 265 IPR036640 GO:0005524|GO:0016020
Pral5005g00038 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 507 IPR027417 -
Pral5005g00038 512 CDD ABC_6TM_TAP 7 242 - -
Pral5005g00038 512 ProSitePatterns ABC transporters family signature. 406 420 IPR017871 GO:0005524|GO:0016887
Pral5005g00038 512 Pfam ABC transporter transmembrane region 7 219 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5005g00038 512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 8 234 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5005g00038 512 PANTHER ABC TRANSPORTER B FAMILY 8 504 IPR039421 -
Pral5005g00038 512 SUPERFAMILY ABC transporter transmembrane region 7 250 IPR036640 GO:0005524|GO:0016020
Pral5005g00038 512 Gene3D - 266 508 IPR027417 -
Pral5005g00038 512 SMART AAA_5 295 483 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5005g00038 Pral-Chr5005 298356 304822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5005g00038 23 510 Calmodulin-binding Proteins AT2G36910 35.070 9.50e-75 255