Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5005g00033 ATGGAAGAAGCTTTTAGGCGTCTCAACGGCCTTGGTCCCAACGAATCCTTCTCTGATCACCACCACAAGAAGTGCACTCCCGCCGCCAACAAGAGGGCTTCGAGAGACAACGGCGCCGGCGGTACGAGGTACCGTGGAGTTAGGCGTAGGCCCTGGGGCCGTTACGCCGCCGAGATAAGGGACCCTCTGTCGAAGGAGCGACGTTGGCTTGGTACCTTCGACACGGCGGAGGAAGCCGCTTGTGCCTACGACTACGCCGCCCGAGCCATGCGTGGCCTTAAAGCTCGCACCAACTTCGTCTACCCAACTTCCCTTTCTCCTTACTCTGTTCCTTACAATCTCTTACCTCCTTCTTTTAACTTTCCGAAGCTGTCTCAGTCGCCGTCCGTTAATATTAACAAGAACCTCCATAGCCACCTTGTGGGAGCTTCTAGTTGGGCTAACCATCGTCCCTGTTCAACCCACCGAAACTCTTCCTCGAACAACATGATTATGCACCCTGATGTTCTCGACCCTTCTGTGGTCGCTTTTTCTTCATCGTCGTCCGCCTGTCCTACGTGTACTTGTCTCCGAGGATGCTGTTTGATGAATTCTTCTGGTGGCGCTAATACTGTTAGCAGTAGCACGTGTGGGTCTGCTTCCTTCTCGACGACCGCAACCCATCATAATGGAATAACGAAGAGCGATTTTGAAGCTGATGATGAATCTGCGTTCTTCCCAAGAGAAGTTTCAGACTCGGGGTTGTTGGAGGAGATAGTTCACAAATTTATGTTAACTTCGAAGCCCAAGAAATTTGAGCCTCCCCCAGAATTACCCCCTCAACCTCAGCCTCAGCCTCAGTACCAGTCAGTGCCTGATGATCCTAGGTTTGTTTCTGCTTCTCAACGCTATTATGAAACCAAGAAGGAGGGTTTTGGTGTCCATTTGGACGACCAAGGTTTTCTTCCTATGCAACAACAGTTCGAGGGTTTTGATGAGCAGGCTATGCGTTTCGGCAACAGTCATCAGTTGATGAACCATGCAGATTTCTCAATCACGCAAGATCTTGTTCGCTATCAAGAGATTCTTAATACCTTTGCAGCCAGCGTCCAGAATGCTTAA 1101 0.5041 MEEAFRRLNGLGPNESFSDHHHKKCTPAANKRASRDNGAGGTRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDYAARAMRGLKARTNFVYPTSLSPYSVPYNLLPPSFNFPKLSQSPSVNINKNLHSHLVGASSWANHRPCSTHRNSSSNNMIMHPDVLDPSVVAFSSSSSACPTCTCLRGCCLMNSSGGANTVSSSTCGSASFSTTATHHNGITKSDFEADDESAFFPREVSDSGLLEEIVHKFMLTSKPKKFEPPPELPPQPQPQPQYQSVPDDPRFVSASQRYYETKKEGFGVHLDDQGFLPMQQQFEGFDEQAMRFGNSHQLMNHADFSITQDLVRYQEILNTFAASVQNA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5005g00033 366 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Pral5005g00033 366 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
Pral5005g00033 366 MobiDBLite consensus disorder prediction 265 282 - -
Pral5005g00033 366 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Pral5005g00033 366 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Pral5005g00033 366 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Pral5005g00033 366 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 32 218 - -
Pral5005g00033 366 MobiDBLite consensus disorder prediction 1 45 - -
Pral5005g00033 366 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Pral5005g00033 366 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Pral5005g00033 366 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Pral5005g00033 366 MobiDBLite consensus disorder prediction 263 288 - -
Pral5005g00033 366 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5005g00033 Pral-Chr5005 255033 256133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5005g00033 1 330 AP2-EREBP Transcription Factor Family AT1G24590 34.286 8.13e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral5005g00033 AP2 5.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5005g00033 - - pcin:129322403 452.595