Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5005g00023 ATGGATTTTGAGGAGCAAGAGGAGGAACTGGGGATGGGACCCGCAGGGAGTTACGACTCGATGGGGAACCCGACCCGGGTGAAAATGGCGAGTGGCGGAGAAGTGATGGTGGTTCAGCCTTTGAGGAATAGTAATAATAAGGCAAGGTATAGGGAGTGCTTGAAGAACCACGCCGTGAGCATCGGCGGCCACGCGCTCGACGGCTGCGGCGAGTTCCTCCCAGCCGGAGCGGAAGGCACGATGGACGCCCTCAAATGTGCCGCCTGTAACTGCCACCGCAATTTCCACCGCAAAGAAACGGACACGATCAGTATCGGAGTCGGGGAACCGTATTTGTTGACCAACCATCCCCATCTCCACCATCACCAGCCACCTCAGTTCTCGCCGTATTACCGGGCCGCGCCGGCGGGGTATTTGCACGTGGGAGCACAGCAAAGGGGGCCGGCGACGCTGGCGCTGCCGTCAACGTCAGGAGCAGGGTGTGGGATCCAGAGCACAAGGGACGATCAGGAGGACGTTTCAAATCCGAGTGCAGGAGGAGGGGAGGGCTCGAAGAAGAGGTACAGGACCAAGTTCACGCAGGAACAAAAGGACAAAATGCTGGCTTTGGCTGAGAGACTGGGTTGGAGGATTCAGAAACACGACGAGTCGGTGGTCCAACAGTTCTGTGACGAGACGGGTGTGAGGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACCCTTGGTAAGAAGCCCTAG 747 0.577 MDFEEQEEELGMGPAGSYDSMGNPTRVKMASGGEVMVVQPLRNSNNKARYRECLKNHAVSIGGHALDGCGEFLPAGAEGTMDALKCAACNCHRNFHRKETDTISIGVGEPYLLTNHPHLHHHQPPQFSPYYRAAPAGYLHVGAQQRGPATLALPSTSGAGCGIQSTRDDQEDVSNPSAGGGEGSKKRYRTKFTQEQKDKMLALAERLGWRIQKHDESVVQQFCDETGVRRHVLKVWMHNNKHTLGKKP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5005g00023 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Pral5005g00023 248 MobiDBLite consensus disorder prediction 1 26 - -
Pral5005g00023 248 SUPERFAMILY Homeodomain-like 175 246 IPR009057 -
Pral5005g00023 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 244 - -
Pral5005g00023 248 Gene3D - 170 246 - -
Pral5005g00023 248 NCBIfam homeobox domain, ZF-HD class 185 241 IPR006455 -
Pral5005g00023 248 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Pral5005g00023 248 MobiDBLite consensus disorder prediction 157 173 - -
Pral5005g00023 248 MobiDBLite consensus disorder prediction 157 189 - -
Pral5005g00023 248 FunFam Zinc-finger homeodomain protein 2 172 246 - -
Pral5005g00023 248 Pfam ZF-HD protein dimerisation region 48 100 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5005g00023 Pral-Chr5005 164931 166226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5005g00023 1 244 ZF-HD Transcription Factor Family AT4G24660 51.417 4.01e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral5005g00023 ZF-HD_dimer 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5005g00023 - - qsa:O6P43_025228 363.999