Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5001g00086 ATGTCGTCGCCGGAACCCTCCATCCTCGCCGCCAATGACGACTGTGCTGATGCGGGCACCACCTCTTTCGTCACCGACCTCAGCATCGGCTCCTTATTCACCAAGGCACTCCTCATCCTCCTCTTCGTCTTCGTCGTCATCCGCGTATCTATCACCATTTTCCGCTCGTGCCGCGGCGGCAACCATCAACAAAGCAGCCACCGAGGTGACGGCGTCCCTGACTCATCTGGTAATAATCCCGACGGCCATCACGACGAAGAGAACCCCGTCCACAATGAAGCGGGGGGAATAACCCCTAATAGAGTCCTTGAAGTTGAAGCCGTCATCAACTCGTACCCGAGTTTCTTGTACTGTCATACGAAAGCCGACGAACGAAACAACACGACATGTCCGATTTGCATGTGCGAGTATTTGGAGTCGGAGATGATAAGGATGATGCCAAAATGTGGGCATTACTTTCACCTTATATGCCTCGACGAATGGCTGAGGATTAATTGGTCGTGTCCTGTGTGTCGCGACTCGCCGTCGTTGCAACATGCCACGACATCGTCGTCGCCGCAGGCCACGCCGTCGTTGCAACAGGCCACGCCGTCGTTGCAACAGGCCACGCCGTCGTTGCAACAGCAGACGACGTCGTCTTCACAGGACGCGCCGTCGTCGTCGTCCTGCGACTAA 675 0.56 MSSPEPSILAANDDCADAGTTSFVTDLSIGSLFTKALLILLFVFVVIRVSITIFRSCRGGNHQQSSHRGDGVPDSSGNNPDGHHDEENPVHNEAGGITPNRVLEVEAVINSYPSFLYCHTKADERNNTTCPICMCEYLESEMIRMMPKCGHYFHLICLDEWLRINWSCPVCRDSPSLQHATTSSSPQATPSLQQATPSLQQATPSLQQQTTSSSQDAPSSSSCD 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5001g00086 224 MobiDBLite consensus disorder prediction 59 96 - -
Pral5001g00086 224 PANTHER RING-H2 FINGER PROTEIN ATL67 17 193 IPR044289 GO:0016567|GO:0016740
Pral5001g00086 224 MobiDBLite consensus disorder prediction 179 224 - -
Pral5001g00086 224 MobiDBLite consensus disorder prediction 59 73 - -
Pral5001g00086 224 Pfam Ring finger domain 129 172 IPR001841 -
Pral5001g00086 224 SUPERFAMILY RING/U-box 110 178 - -
Pral5001g00086 224 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Pral5001g00086 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 176 IPR013083 -
Pral5001g00086 224 SMART ring_2 130 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5001g00086 Pral-Chr5001 506915 507589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5001g00086 106 175 C3H Transcription Factor Family AT2G35910 45.714 6.83e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5001g00086 - - pcin:129290900 251.906