Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5001g00072 ATGGGCGACTGTGATGGAGGGGACTTTGCCGGAACCATTTGCTCAATCTGCTACGAAGTTCTTAAGCCCATTACCGAAGACCTCCAATCCATCAATATCTGCGGCCATGTCTTCCACGAGCTCTGTTTGCAGCAATGGTTCGAGTACTGTTCAACGGCAAAGAAATGCACTTGCCCTGTGTGCAAGCAGAGTTGTAAAGCAAGCGATGTTGCTCGGCTGTATTTCCAGTCTCTCGGAGACGTGAAGGATGCTGTTCTTCCTGAGAAACTCATTGGGTCTGAGGAGGAAGATGCGGGGGTTTTGCGTAGAGAAGTGAAAATGTTGGCATTGAAAGTTTCGGGGCTTAGTTCAAAATTGGAGCAGCAGGGGAAGAAATTGGGAGATGTTACCGATGAGCTTTGCGCTTGCAAGGAACAAGCAAAATTAGATGCAGAACTAAAAAACGACGCGTTGAAACAAAGAGCATTCATACAAAACCAGCTTCTTATGAAATCAGAGGAGCTTGAAAAGTCAACTTTGGAGTGTTCGAGATTACAAGATAGAAATATGGCACTGGCTAAAGAACTCGTGGCATTCAAATTAGTAGTAGATCCCAACCTTGACGAGGATGAGGTTTTGAAGCTTGCCACTTTGGGCAATGGTGCCAACAGCAAAGATACGATTGACACATTACGAAGATCTTTGGTCATGCGGAACAGGAGTTACAAAGAATTAATGACCAAGTGCAATATTCTGGGAAGAGCGGAGGCACGTTATAGTAGAAAGCTTGAGAAGGCTAAAGAGAAAGTAAAGAAACTGAAGGAAAGGATACAAGAACTGGAAACAGCAGCTGAAGTAAAAGAGAATGAGATCCTAAGGTCTCTGAAAGTTTCAAAGAAAGCAGGTTGCTTAAAGAATCTTGAAAACAATAGCAGTTATAATTCTGATCTATTGTCAGCAGATAAAATTTCATCAAAGGAAAACGGGAAGCAAATTTTGACACCCCATTCCAGAGCTGATCTCTCTGCGAACGTCAACAATAACGTGACGCAATCTGCAAGGATGGAGGACATCGATTGTAAGCAAATTAGAGAAAATAAAGATGTGAATTTCAGCAAAGAAAATTCAACTTGGATGTCTCTTAATGGAGAGGAAAATTACATCTCACTTGATGAAGACGATTCAGAATTTGCTAAAGCTTTGCCAGGATCTGCAAAATACAACGGTAATGACCATGACAGTGATAGTGTTGCTCTTAGGAAACCCATAGCAAAGTCAGAGGCAGCTTCTATTGTAGCGAGAGAAACCGCAATGCAAGAAGACAACCGGGCGGAGCCTTTAAGAGTTGACGTTAACAATGAATTTGGTAAAAATACTGCTGGTACTATGCCTGAAGACGTGACATTGCCAGACAATGTGAAACAAGTTCAGACCATTGTTAATATTCGAAAAGAAAATCTATCTCCACTGCCACTTTCCAGTCCAGGTGATATTTGTTTTTCTGGCGGCTTACTTGGTCCTGATGGAACTAATCGATACTTGGGGAGATGGTGCAAGCGTGGACAGAAAAACGAATCAGTCACTCCAAAAGCTTCGATCAGTGGTGATTTGATAGCCGTAGGGGCTGATGGTAGAGGTGGTAAAGTTAAAGTTCTGAGATCTCCAAACCAAACCTTCCAGGACTGTAAGGAGAATTCAATAGGTTCAAAAAGATTGAAATTCGGACCTAAAGCAAATAGCATGCAGTCCCAGGGGTGCCTGCAGATAGAACACTTCTTTGGGAGGATCAGTCACTAA 1776 0.4262 MGDCDGGDFAGTICSICYEVLKPITEDLQSINICGHVFHELCLQQWFEYCSTAKKCTCPVCKQSCKASDVARLYFQSLGDVKDAVLPEKLIGSEEEDAGVLRREVKMLALKVSGLSSKLEQQGKKLGDVTDELCACKEQAKLDAELKNDALKQRAFIQNQLLMKSEELEKSTLECSRLQDRNMALAKELVAFKLVVDPNLDEDEVLKLATLGNGANSKDTIDTLRRSLVMRNRSYKELMTKCNILGRAEARYSRKLEKAKEKVKKLKERIQELETAAEVKENEILRSLKVSKKAGCLKNLENNSSYNSDLLSADKISSKENGKQILTPHSRADLSANVNNNVTQSARMEDIDCKQIRENKDVNFSKENSTWMSLNGEENYISLDEDDSEFAKALPGSAKYNGNDHDSDSVALRKPIAKSEAASIVARETAMQEDNRAEPLRVDVNNEFGKNTAGTMPEDVTLPDNVKQVQTIVNIRKENLSPLPLSSPGDICFSGGLLGPDGTNRYLGRWCKRGQKNESVTPKASISGDLIAVGADGRGGKVKVLRSPNQTFQDCKENSIGSKRLKFGPKANSMQSQGCLQIEHFFGRISH 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5001g00072 591 Coils Coil 249 283 - -
Pral5001g00072 591 Coils Coil 168 188 - -
Pral5001g00072 591 Pfam Ring finger domain 13 62 IPR001841 -
Pral5001g00072 591 SUPERFAMILY RING/U-box 13 66 - -
Pral5001g00072 591 SMART ring_2 14 61 IPR001841 -
Pral5001g00072 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 98 IPR013083 -
Pral5001g00072 591 PANTHER RING ZINC FINGER PROTEIN-RELATED 6 589 - -
Pral5001g00072 591 ProSiteProfiles Zinc finger RING-type profile. 14 62 IPR001841 -
Pral5001g00072 591 CDD RING-H2 14 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5001g00072 Pral-Chr5001 428466 432330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5001g00072 442 588 C3H Transcription Factor Family AT4G01270 39.873 1.83e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5001g00072 K11985 - gmx:100812811 670.618