Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5001g00071 ATGGGCGACTGTGATGGAGGGGACTTTGCCGGAACCATTTGCTCAATCTGCTACGAAGTTCTTAAGCCCATTACCGAAGACCTCCAATCCATCAATATCTGCGGCCATGTCTTCCACGAGCTCTGTTTGCAGCAATGGTTCGAGTACTGTTCAACGGCAAAGAAATGCACTTGCCCTGTGTGCAAGCAGAGTTGTAAAGCAAGCGATGTTGCTCGGCTGTATTTCCAGTCTCTCGGAGACGTGAAGGATGCTGTTCTTCCTGAGAAACTCATTGGGTCTGAGGAGGAAGATGCGGGGGTTTTGCGTAGAGAAGTGAAAATGTTGGCATTGAAAGTTTCGGGGCTTAGTTCAAAATTGGAGCAGCAGGGGAAGAAATTGGGAGATGTTACCGATGAGGAGCTTGAAAAGTCAACTTTGGAGTGTTCGAGATTACAAGATAGAAATATGGCACTGGCTAAAGAACTCGTGGCATTCAAATTAGTAGTAGATCCCAACCTTGACGAGGATGAGGTTTTGAAGCTTGCCACTTTGGGCAATGGTGCCAACAGCAAAGATACGATTGACACATTACGAAGATCTTTGGTCATGCGGAACAGGAGTTACAAAGAATTAATGACCAAGTGCAATATTCTGGGAAGAGCGGAGGCACGTTATAGTAGAAAGCTTGAGAAGGCTAAAGAGAAAGTAAAGAAACTGAAGGAAAGGATACAAGAACTGGAAACAGCAGCTGAAGTAAAAGAGAATGAGATCCTAAGGTCTCTGAAAGTTTCAAAGAAAGCAGGTTGCTTAAAGAATCTTGAAAACAATAGCAGTTATAATTCTGATCTATTGTCAGCAGATAAAATTTCATCAAAGGAAAACGGGAAGCAAATTTTGACACCCCATTCCAGAGCTGATCTCTCTGCGAACGTCAACAATAACGTGACGCAATCTGCAAGGATGGAGGACATCGATTGTAAGCAAATTAGAGAAAATAAAGATGTGAATTTCAGCAAAGAAAATTCAACTTGGATGTCTCTTAATGGAGAGGAAAATTACATCTCACTTGATGAAGACGATTCAGAATTTGCTAAAGCTTTGCCAGGATCTGCAAAATACAACGGTAATGACCATGACAGTGATAGTGTTGCTCTTAGGAAACCCATAGCAAAGTCAGAGGCAGCTTCTATTGTAGCGAGAGAAACCGCAATGCAAGAAGACAACCGGGCGGAGCCTTTAAGAGTTGACGTTAACAATGAATTTGGTAAAAATACTGCTGGTACTATGCCTGAAGACGTGACATTGCCAGACAATGTGAAACAAGTTCAGACCATTGTTAATATTCGAAAAGAAAATCTATCTCCACTGCCACTTTCCAGTCCAGGTGATATTTGTTTTTCTGGCGGCTTACTTGGTCCTGATGGAACTAATCGATACTTGGGGAGATGGTGCAAGCGTGGACAGAAAAACGAATCAGTCACTCCAAAAGCTTCGATCAGTGGTGATTTGATAGCCGTAGGGGCTGATGGTAGAGGTGGTAAAGTTAAAGTTCTGAGATCTCCAAACCAAACCTTCCAGGACTGTAAGGAGAATTCAATAGGTTCAAAAAGATTGAAATTCGGACCTAAAGCAAATAGCATGCAGTCCCAGGGGTGCCTGCAGATAGAACACTTCTTTGGGAGGATCAGTCACTAA 1674 0.4289 MGDCDGGDFAGTICSICYEVLKPITEDLQSINICGHVFHELCLQQWFEYCSTAKKCTCPVCKQSCKASDVARLYFQSLGDVKDAVLPEKLIGSEEEDAGVLRREVKMLALKVSGLSSKLEQQGKKLGDVTDEELEKSTLECSRLQDRNMALAKELVAFKLVVDPNLDEDEVLKLATLGNGANSKDTIDTLRRSLVMRNRSYKELMTKCNILGRAEARYSRKLEKAKEKVKKLKERIQELETAAEVKENEILRSLKVSKKAGCLKNLENNSSYNSDLLSADKISSKENGKQILTPHSRADLSANVNNNVTQSARMEDIDCKQIRENKDVNFSKENSTWMSLNGEENYISLDEDDSEFAKALPGSAKYNGNDHDSDSVALRKPIAKSEAASIVARETAMQEDNRAEPLRVDVNNEFGKNTAGTMPEDVTLPDNVKQVQTIVNIRKENLSPLPLSSPGDICFSGGLLGPDGTNRYLGRWCKRGQKNESVTPKASISGDLIAVGADGRGGKVKVLRSPNQTFQDCKENSIGSKRLKFGPKANSMQSQGCLQIEHFFGRISH 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5001g00071 557 Coils Coil 215 249 - -
Pral5001g00071 557 SUPERFAMILY RING/U-box 13 66 - -
Pral5001g00071 557 PANTHER RING ZINC FINGER PROTEIN-RELATED 130 555 - -
Pral5001g00071 557 SMART ring_2 14 61 IPR001841 -
Pral5001g00071 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 150 IPR013083 -
Pral5001g00071 557 Coils Coil 134 154 - -
Pral5001g00071 557 ProSiteProfiles Zinc finger RING-type profile. 14 62 IPR001841 -
Pral5001g00071 557 CDD RING-H2 14 62 - -
Pral5001g00071 557 Pfam Ring finger domain 13 62 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5001g00071 Pral-Chr5001 428466 432330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5001g00071 408 554 C3H Transcription Factor Family AT4G01270 39.873 3.13e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5001g00071 K11985 - gmx:100812811 608.986