Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5001g00058 ATGGTGTCCGTGAACCCAAATCCATCTCAAGGTTTTTATTTCTTCGATCCCATGAATACTGGCCTTCCCGGTCTCAATCACACTCTGCCGCCCCCGACGGCGACTCCGGCCGCTGCCAATACGTATTCGGATGATCCGAACAAGAAGATTCGAAAACCGTATACGATTACTAAGTCCAGAGAGAATTGGTCCGAGCAGGAGCACGACAAGTTTCTCGAAGCTCTCCAATTATTTGATCGTGATTGGAAGAAGATTGAAGCATTTGTTGGGTCAAAAACTGTTATCCAGATAAGAAGTCATGCGCAGAAGTATTTTCTAAAAGTTCAGAAGAATGGGACTAGCGAACATGTACCTCCTCCCCGGCCGAAGAGAAAAGCTGCTCATCCTTATCCACAAAAGGCCCCTAAAAATGGTACCGGACCAATGCAATCTTCATCTGTTTTTGCGGAGCCTGCATACATTTATAGGCCAGATTTGTCATCCGTGCTTGGAACACCTGTTACCAGTGTGCCTTTGTCATCCTGGAATTGTGATGCTATGCCGCCCGTCAGCATGCCACAAGTGGCTAAAGATGATATAGGATTAGCTGGACAAGCTGTTCCTCGTAATTGTTGCTATAGCAGTAGTAATGAGAGCGCTCCTGGAGTTTGGCCTAATAATAAATGTACAGATCAAGTGGACCAAGGCAAGCTGATAAGTGTAATGCCAGATTTTGCGCAAATCTATAGGTTCATCGGTAGTGTGTTTGATCCAAATGCAACTGATCATCTACAGAGACTGAAAAAGATGGACCCAATAAATGTGGAAACAGTATTGTTGTTGATGAGAAACCTCTCCATCAATTTAACGAGTCCTAAGTTTAAGGATCATCAGAAATTGCTTTCGTCGTATGATGTTGACCTGAGGAAGGCGAAGACTGGTAGTCTCTACAATGATCCCCTGACCAACAAATCCGAAAGTGCTGTTCTGTCTGCTTAG 978 0.4458 MVSVNPNPSQGFYFFDPMNTGLPGLNHTLPPPTATPAAANTYSDDPNKKIRKPYTITKSRENWSEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNGTGPMQSSSVFAEPAYIYRPDLSSVLGTPVTSVPLSSWNCDAMPPVSMPQVAKDDIGLAGQAVPRNCCYSSSNESAPGVWPNNKCTDQVDQGKLISVMPDFAQIYRFIGSVFDPNATDHLQRLKKMDPINVETVLLLMRNLSINLTSPKFKDHQKLLSSYDVDLRKAKTGSLYNDPLTNKSESAVLSA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5001g00058 325 Pfam Myb-like DNA-binding domain 60 105 IPR001005 -
Pral5001g00058 325 SUPERFAMILY Homeodomain-like 54 110 IPR009057 -
Pral5001g00058 325 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Pral5001g00058 325 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Pral5001g00058 325 ProSiteProfiles SANT domain profile. 58 111 IPR017884 -
Pral5001g00058 325 Gene3D - 62 110 - -
Pral5001g00058 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Pral5001g00058 325 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Pral5001g00058 325 CDD SANT 62 105 IPR001005 -
Pral5001g00058 325 MobiDBLite consensus disorder prediction 109 143 - -
Pral5001g00058 325 PANTHER SWI/SNF COMPLEX-RELATED 37 283 - -
Pral5001g00058 325 SMART sant 59 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5001g00058 Pral-Chr5001 340611 344273 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral5001g00058 Myb_DNA-binding 7.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5001g00058 - - gmx:778090 471.47