Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5001g00033 ATGGGCTTTCCGGTGGGATACACCGATGTCGTTTTGCCCAATCTCTTCCTCCACACACTCTCGCTCCTCGGAGTCATCCGCAACCTCATCTTCATGCTATTCCACTCCCTCGGCATCTCCGATTTCCTCGAAACCGAGGTCGTCTGGTCCGAATCTCAAGCTCGATTGCCCGACAGCCCCCCGGTTTCCGCGCTGCTGATCCGCGAATTCCTCCCTGTCGTGAAGTTCGGCGAGCTCCTCGCCGCCAACGCCGCCGGCGACACGCCCGAGAGCTGCGCCGTCTGCCTGTACGAGTTCGAGGGGGAGGAGGAAATCAGGTGCCCGACCAATTGCAAGCACATTTTTCATCGGGCTTGTCTGGACCGTTGGCTGGATCACGATCAGAAGACCTGTCCCCTGTGTAGGACCCCCTTTGTGCCTGATAATAGGCAGGATGATTTCAATCAACGGCTCTGGGCTGCTTCCGGAGTCTCTGATGTTTATGGAGACTACACTTCTCTGTGA 504 0.5734 MGFPVGYTDVVLPNLFLHTLSLLGVIRNLIFMLFHSLGISDFLETEVVWSESQARLPDSPPVSALLIREFLPVVKFGELLAANAAGDTPESCAVCLYEFEGEEEIRCPTNCKHIFHRACLDRWLDHDQKTCPLCRTPFVPDNRQDDFNQRLWAASGVSDVYGDYTSL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5001g00033 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 155 - -
Pral5001g00033 167 FunFam RING-H2 finger protein ATL73 67 142 - -
Pral5001g00033 167 SUPERFAMILY RING/U-box 91 141 - -
Pral5001g00033 167 Pfam Ring finger domain 91 135 IPR001841 -
Pral5001g00033 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 140 IPR013083 -
Pral5001g00033 167 SMART ringv_2 91 135 IPR011016 GO:0008270
Pral5001g00033 167 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
Pral5001g00033 167 SMART ring_2 92 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5001g00033 Pral-Chr5001 225045 225845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5001g00033 1 166 C3H Transcription Factor Family AT1G63840 50.000 5.36e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5001g00033 K16281 - qsa:O6P43_017655 279.256