Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5001g00028 ATGGGAGGTTGCTGCTGCAGTGCCAGAAAACCTCATCTGCATGGAACACCAGTTTATATCTATTGTCCACCGGCTTTGGAAGAGCACGAGTCTTTAACTACTAATGATGGTACTGGTGGTTCACTCACTGCCGGCTTGCTGGTCGGTTTGGACCTTCAGGGATCAACACCTGATACTTACCGGCCCCCTCCTGCACCGTTGCCATATGATACGGTTTTGGGTTGTCCAGTGTCAACTGATTCTGAGTCAGGCAGAGAAACAGTTAGTGGTAGTAGTTTTGCAACTTTACTTACATGTGAAGATATTGAAGATGCGGAATGCAAAGTTCATGCTAATTCTATGCCTACATCTCCAAGGAAGCCAGAACTAACAAAATCAAATGAATCTCATGTATTAGTGACAGAGGAAGAGGATGGTTGCCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACCAAGTGTGAACACCACTTTCACCTATCTTGCATTCTTGAGTGGATGGAACGAAGCGACTCTTGTCCCATATGTGATCAGGAGATGATCTTTGACCAGAAACTGAATTAG 576 0.441 MGGCCCSARKPHLHGTPVYIYCPPALEEHESLTTNDGTGGSLTAGLLVGLDLQGSTPDTYRPPPAPLPYDTVLGCPVSTDSESGRETVSGSSFATLLTCEDIEDAECKVHANSMPTSPRKPELTKSNESHVLVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQKLN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5001g00028 191 MobiDBLite consensus disorder prediction 111 131 - -
Pral5001g00028 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 190 IPR013083 -
Pral5001g00028 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Pral5001g00028 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 188 - -
Pral5001g00028 191 Pfam Ring finger domain 140 180 IPR001841 -
Pral5001g00028 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Pral5001g00028 191 SMART ring_2 140 180 IPR001841 -
Pral5001g00028 191 SUPERFAMILY RING/U-box 134 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5001g00028 Pral-Chr5001 171717 175858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5001g00028 1 191 C3H Transcription Factor Family AT4G00335 58.639 8.13e-77 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5001g00028 - - gmx:100792561 345.51