Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5001g00027 ATGTCGCTTCTCACTCCTCAGCCCTCTTCCTCCCCCATACCCTTCGCTTTCTTCTTCCTCTTCCTCTTCGCTTTTTCCTCTTCTCAAGCTAACTCTTCCGACGGGGGCAGGAAGGTGCAAGCCAACCGCGTTCTGTTAACAGGAAATGAGACCTTGCGCAGTGAGAATGGGACATTCGAGCTTGGCTTCTTCAGCTTCAATGGCGGAGAACCCAATTATTACTTGGCGATAAGGTACGCGTCGGTTCCGCTTCCCACGTACGTCTGGGTCGCGAATCGCGAAAAACCCAGCAAAAATCTCGCCTATTCGACCCTGGAAATCACTGAAACTGGCCTCCTTGTTGTGAAAGATTCACCAACCTCGATTCTTTGGCAGAGTACGAATTTAGAAACTTCTGGAGCAGGAGAAGTAAAGCTTTTAGACAGTGGGAATTTGGTCCTCCTCACTCGTGACAGCTCTGTTTCATGGCAGAGCTTCGATTTTCCCACGGACGCTTGGCTCCCGGGCATGAATATGACCCGGACCCGGTCCCTGGTGTCGTGGCGGAGCCCCACGGACCCATCGCCGGGACTCTATTCTCTGCGGCTGAAACCGCCAGGCTACGGTGAGTTCGAGCTCCTCTTCAATGACTCCAAATCTTATTGGACAACCGGACGGTGGAAGGGCGACTCGTTCCTCAACATTCCGGAGATGATGATTCCATACCTCTATCTCTTCGACTTCGCGAATCCATTCACACCAAAGGCTTCGTTTGGGTTCCGGGAGAAGCCTCTGAACGGGCAGAGACCACCCACGTATTTCCGAGTCGAATCGTATGGGCAGGTCCGACAGTACACATGGTGGTCTCAGGCTGGAAGCTGGAACATTTTCTGGTCGGAGCCGAAAAATGTGTGTGACGTTCATGGCCTGTGTGGTAGCCTTGGAGTCTGCAATGGCGAAACTACGCCGGAGTGCCAGTGCGTCTCCGGTTACAAGCCCTTGGACGACGGTAGATGGGCTTCCGCAGACTACTCCGGCGGGTGCCGTCGGAAAACCGATAGTCCCTGCGATAAAAGTGATGGGTTCGAAGATATGGGCGTTATGAGCTTTGAAGCACTCAATGTGCGATCGTTTCAAACCAAGTCTCGCGGCAATTGCGAGACTAATTGTTTAAGTTCTTGTGATTGTATTGGTTTATCTTTCAGTCAAAAGACCGGTTCCTGCCGGAACTTCTTCGGCTCAATTCTGAATCTCCATAATTCATCTTCTGAAACCCCTGTTTCTGGCAATTTGTATGTTAGGGTACAACGAGGTGAATCTGTGAAGAGACAGAGTCGTCAAATTCTGACTGGCACTATCATTGGGGCAATTGCTTTTCTTGGGTTAATAGTGGCGACATTGTTAGTATTGCTGAATCGAAGGCGGAAGAAGAAGAAACTAGAAGAAGATGGATTGATTCCTGTTCTGAATCTTCAGTTATTTTCCTACAAAGAGCTGCAATTAGCGACTCGGGGATTCTCAGAGAAGGTGGGCCATGGTGGGTTCGGGACAGTATTTCAAGGAGAATTACCAGATTCAACCCTCGTAGCCGTGAAGCGACTGGAGAGGCCAGGTGGTGGAGAAAAGGAGTTCAGAGCCGAAGTTTCCACCATTGGTAATATCCAACATGTTAATCTCGTTAGACTCAGAGGCTTTTGCTCAGAAAATTCTCACAGACTTCTGGTTTACGAGTTCATGCCCAACGGTGCTCTTAGTTCTTACCTTCGCAAGGAAGGAGGGCCTAGTCTAAGCTGGGATGTTAGGTTCCGAATAGCCGTGGGAACAGCCAAAGGTATAGCTTACTTGCACGAAGAATGTCGAGATTGCATCATTCACTGTGATATCAAACCCGAAAACATCCTCTTGGACACCAATTTCACGGCCAAAGTTTCTGACTTTGGATTAGCGAAGCTCATGGGGAGGGATTTCAGTAGGGTTTTAGCAACCATGAGAGGTACCTGGGGGTATGTAGCACCGGAGTGGATTTCTGGCGTAGCAATCACCACAAAAGCTGATGTTTACAGCTACGGCATGACATTGATAGAGCTGATCAGCGGTCGCCGGAATGTGGAGGCACCCCCACAATCAGGTGGTGGCGCCGGCTTCGAGGAGGCCGGAGAGAAAGAGAAATGGTTCTTCCCTCCGTGGGCTGCACGGCAGATAACTGAAGGGAATTGGACTGCAATACTTGACAGGAGACTTGGGAATGCGTACAACATGGAGGAGGTAAGGAGGGTGGCTCTGGTGGCTGTATGGTGCATTCAGGATGATGAAGGAAGTAGGCCTACAATGGGGATGGTGGTGAAGATGTTGGAGGGGTTAGTGCAAGTAGAAGTTCCTCTCACGCCTAAATTGCTTCAGGCATTGGTTTCCGGCGAGTCCTTTAGAGGCATCAAGGCAGATTCCGGCACCTCCGGTGGCAATGCCGATTCAGAATCATTTACAGTGTGTGTTTCTTCCCCAGCAACCATGAATGTCAATGTCGTTGTACAATGA 2514 0.5012 MSLLTPQPSSSPIPFAFFFLFLFAFSSSQANSSDGGRKVQANRVLLTGNETLRSENGTFELGFFSFNGGEPNYYLAIRYASVPLPTYVWVANREKPSKNLAYSTLEITETGLLVVKDSPTSILWQSTNLETSGAGEVKLLDSGNLVLLTRDSSVSWQSFDFPTDAWLPGMNMTRTRSLVSWRSPTDPSPGLYSLRLKPPGYGEFELLFNDSKSYWTTGRWKGDSFLNIPEMMIPYLYLFDFANPFTPKASFGFREKPLNGQRPPTYFRVESYGQVRQYTWWSQAGSWNIFWSEPKNVCDVHGLCGSLGVCNGETTPECQCVSGYKPLDDGRWASADYSGGCRRKTDSPCDKSDGFEDMGVMSFEALNVRSFQTKSRGNCETNCLSSCDCIGLSFSQKTGSCRNFFGSILNLHNSSSETPVSGNLYVRVQRGESVKRQSRQILTGTIIGAIAFLGLIVATLLVLLNRRRKKKKLEEDGLIPVLNLQLFSYKELQLATRGFSEKVGHGGFGTVFQGELPDSTLVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEFMPNGALSSYLRKEGGPSLSWDVRFRIAVGTAKGIAYLHEECRDCIIHCDIKPENILLDTNFTAKVSDFGLAKLMGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLIELISGRRNVEAPPQSGGGAGFEEAGEKEKWFFPPWAARQITEGNWTAILDRRLGNAYNMEEVRRVALVAVWCIQDDEGSRPTMGMVVKMLEGLVQVEVPLTPKLLQALVSGESFRGIKADSGTSGGNADSESFTVCVSSPATMNVNVVVQ 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5001g00027 837 Gene3D - 36 159 IPR036426 -
Pral5001g00027 837 Pfam S-locus glycoprotein domain 215 326 IPR000858 GO:0048544
Pral5001g00027 837 CDD STKc_IRAK 503 780 - -
Pral5001g00027 837 Gene3D Transferase(Phosphotransferase) domain 1 572 786 - -
Pral5001g00027 837 ProSiteProfiles Protein kinase domain profile. 497 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5001g00027 837 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Pral5001g00027 837 Pfam D-mannose binding lectin 86 176 IPR001480 -
Pral5001g00027 837 SMART serkin_6 497 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5001g00027 837 ProSiteProfiles PAN/Apple domain profile. 349 429 IPR003609 -
Pral5001g00027 837 FunFam Receptor-like protein kinase 4 460 571 - -
Pral5001g00027 837 SUPERFAMILY Protein kinase-like (PK-like) 480 778 IPR011009 -
Pral5001g00027 837 FunFam Receptor-like serine/threonine-protein kinase SD1-8 38 159 - -
Pral5001g00027 837 PIRSF SRK 9 828 IPR024171 GO:0004674
Pral5001g00027 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 220 IPR036426 -
Pral5001g00027 837 FunFam S-receptor-like kinase 5 572 786 - -
Pral5001g00027 837 CDD B_lectin 43 162 IPR001480 -
Pral5001g00027 837 SMART blect_4 43 162 IPR001480 -
Pral5001g00027 837 Gene3D Phosphorylase Kinase; domain 1 462 571 - -
Pral5001g00027 837 Pfam Protein kinase domain 500 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5001g00027 837 ProSiteProfiles Bulb-type lectin domain profile. 37 160 IPR001480 -
Pral5001g00027 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Pral5001g00027 837 PANTHER OS07G0415500 PROTEIN 13 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5001g00027 Pral-Chr5001 160431 163169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5001g00027 487 786 Receptor kinase-like Gene Family AT5G20050 44.231 3.97e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pral5001g00027 Pkinase 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5001g00027 - - lja:Lj0g3v0252549.1 1079.32